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The map label for this gene is ydeD [H]

Identifier: 218234298

GI number: 218234298

Start: 600182

End: 601108

Strand: Reverse

Name: ydeD [H]

Synonym: BCB4264_A0619

Alternate gene names: 218234298

Gene position: 601108-600182 (Counterclockwise)

Preceding gene: 218235198

Following gene: 218235052

Centisome position: 11.09

GC content: 34.3

Gene sequence:

>927_bases
ATGAACAATGGTAGACGTATCGGACTCATTATGATTATTACAGGGGCTACATTATGGGGATTATCTGGTCCAATGATTCA
GTGGCTATTTCAACATACTAATGTATCCTCAATTGATTTTTTAACAATTCGATTGTTGCTTGCAGGAATATTTATTTTGT
CTTTCTTACTTATAAAGAAACAAAACATATTTCAAATTTGGAAACACCCTAGATATTCTATACAACTTATTATTTTTTCT
ATTCTCGGCATGCTTGGTGCGCAATACGCCTTTATCGAAACAGTTCATATTAGTAACGCGGTCACAGCAACACTATTTCA
ATTTCTAGGTCCTGTTCTTATAACCATGTATGTTGCATTTGAACAAAGAAAATTCCCTGCTTCCATGCAACTATTCGCAA
TTATAGCCGCGCTAATAGGAACATACTTTATTATTACAAATGGCTCAATTGAAAATGTTGTTTTATCTAAAGAAGCTATT
ATTTTTGGACTATTAACAGCAATTGGATTTGCATTTTATACCCTTCATCCGGCTTCTCTCATTAAAGAATGTGGGACAAC
TGTAGTAATTGGTTGGGGGATGTTAATCGGAGGAATTGCACTACTTATTTATAATCGTTCATTCGGGTGGAATCACTTTT
CACAAACCCTTACACTAAAAACTTTTTCTATGCTTATCCTTATCATTATTAGTGGTACCCTTTCTTTCCTTCTATATATC
GGTAGTCTTAAATATTTAGCAGCAACAGAAACAAGCATTTTATCTAGCATTGAACCCCTTGTAGCTGCCATCGTTTCAAT
TACTTGGCTAAATGAATCTTTTGGAACATATCAATTATTAGGCGGCGTATGTATCGTTCTGTCCGTTATTTTTTTGACGA
TGCCTCAAAAAGAAACCGAACCAACCTATACAACTGAACAAGTATAA

Upstream 100 bases:

>100_bases
AAATAAAATCTGATACTTTTTACAGTACCAGAAGTTATATATAATTCCTTTTATCATGTCACACATAAAAAATCAAATAC
TGGAGAGGAGAAACATGATA

Downstream 100 bases:

>100_bases
AGTGAAACTTTAATTAGTGGGGCTATCTCCCACTGATTATTAACCTACACCAATCGGGCTTTTACGGGATAAAAAATGTC
AAAAGAGGTCGTACAAAACT

Product: transporter, Drug/Metabolite Exporter family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNNGRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKKQNIFQIWKHPRYSIQLIIFS
ILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITMYVAFEQRKFPASMQLFAIIAALIGTYFIITNGSIENVVLSKEAI
IFGLLTAIGFAFYTLHPASLIKECGTTVVIGWGMLIGGIALLIYNRSFGWNHFSQTLTLKTFSMLILIIISGTLSFLLYI
GSLKYLAATETSILSSIEPLVAAIVSITWLNESFGTYQLLGGVCIVLSVIFLTMPQKETEPTYTTEQV

Sequences:

>Translated_308_residues
MNNGRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKKQNIFQIWKHPRYSIQLIIFS
ILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITMYVAFEQRKFPASMQLFAIIAALIGTYFIITNGSIENVVLSKEAI
IFGLLTAIGFAFYTLHPASLIKECGTTVVIGWGMLIGGIALLIYNRSFGWNHFSQTLTLKTFSMLILIIISGTLSFLLYI
GSLKYLAATETSILSSIEPLVAAIVSITWLNESFGTYQLLGGVCIVLSVIFLTMPQKETEPTYTTEQV
>Mature_308_residues
MNNGRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKKQNIFQIWKHPRYSIQLIIFS
ILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITMYVAFEQRKFPASMQLFAIIAALIGTYFIITNGSIENVVLSKEAI
IFGLLTAIGFAFYTLHPASLIKECGTTVVIGWGMLIGGIALLIYNRSFGWNHFSQTLTLKTFSMLILIIISGTLSFLLYI
GSLKYLAATETSILSSIEPLVAAIVSITWLNESFGTYQLLGGVCIVLSVIFLTMPQKETEPTYTTEQV

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=295, Percent_Identity=34.9152542372881, Blast_Score=157, Evalue=6e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 34143; Mature: 34143

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKK
CCCCCEEEEEEEEECCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QNIFQIWKHPRYSIQLIIFSILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITMYVAF
HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
EQRKFPASMQLFAIIAALIGTYFIITNGSIENVVLSKEAIIFGLLTAIGFAFYTLHPASL
HHCCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IKECGTTVVIGWGMLIGGIALLIYNRSFGWNHFSQTLTLKTFSMLILIIISGTLSFLLYI
HHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSLKYLAATETSILSSIEPLVAAIVSITWLNESFGTYQLLGGVCIVLSVIFLTMPQKETE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PTYTTEQV
CCCCCCCC
>Mature Secondary Structure
MNNGRRIGLIMIITGATLWGLSGPMIQWLFQHTNVSSIDFLTIRLLLAGIFILSFLLIKK
CCCCCEEEEEEEEECCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QNIFQIWKHPRYSIQLIIFSILGMLGAQYAFIETVHISNAVTATLFQFLGPVLITMYVAF
HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
EQRKFPASMQLFAIIAALIGTYFIITNGSIENVVLSKEAIIFGLLTAIGFAFYTLHPASL
HHCCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IKECGTTVVIGWGMLIGGIALLIYNRSFGWNHFSQTLTLKTFSMLILIIISGTLSFLLYI
HHHCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSLKYLAATETSILSSIEPLVAAIVSITWLNESFGTYQLLGGVCIVLSVIFLTMPQKETE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PTYTTEQV
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]