Click here to switch to the map view.

The map label for this gene is yxkH [H]

Identifier: 218231900

GI number: 218231900

Start: 352294

End: 353376

Strand: Reverse

Name: yxkH [H]

Synonym: BCB4264_A0377

Alternate gene names: 218231900

Gene position: 353376-352294 (Counterclockwise)

Preceding gene: 218233358

Following gene: 218235727

Centisome position: 6.52

GC content: 35.18

Gene sequence:

>1083_bases
ATGAGAAAATACGCAGCAATTGCTTTATGTACGTCTGCCATTCTAGCAGGCTGCAATACTAGCAATGTAAGCCAAGAACC
TAAAAAAGAGAAAAAGGTTCAAGAAGTAGCTATACAAAAAGAGACTCTACAAGAACAAGGTAAAATTTCTTATACTCCCA
TCACACACGAATCTACAAACACAAGTATTCATATTACAGACTTAAAAGATTCTTTAAATGAAGTGCAATATAAAATTTGG
CGCACAGCTGATGGAAAGGAACGTGCTAAATCTTTTTCTTCTAAAGAAAAGGAGAAACAATTTACAATTCCTTTTGACAT
AAAAGAATTTGAAGGAAAACGCGGTGAGTTCCAAATTGAAGCAACAGGAATGAAAGAAGATGGGAAAACAATCCCGCTTA
CGAAATCTACTATTACTTTCGAACAAAAGGTTCCTGTTCTTATGTATCACGCAATCGATGATTATCATGGTCAAGGTATT
AAAGACTTATTCGTATCACCAGCTAACTTTGAAGCACAAATGAAACATTTAAAAGACAATGGTTATACGCTTTTAACGTT
TGAACGCTGGGGCGATATAAATAAAGTAAATAAGCCGATTTTCGTTACATTTGATGACGGTATGAAAAATAATATGAATG
CATTTCGCGTTTTACAAAAGCTAAAAGATGATACTTTTAAACCGGCTGCAACAGAATATATGATTGTTGATAACGTTGAT
GTAGAAGGAGCATTGTCTACTTCTGAAATAAAAGAAATGGTTGATTCCGGCATTTTCTCGGTGCAATCTCATACTGCAAC
ACATGCAGACTTACCGAAAATTACAAACTATGAGGAAGAGTTAAAAGGTTCAAAAGAAAAACTAGAAAAAATAACAGGTA
AGCCTGTTATCGCGATTGCTTATCCATTCGGTCATGTAGATGATAAGATTGTTACAGAAACGAAGAAGTATTATCAATTT
GCGACGACGACAAAGCCTGGGCAATTCATTACGAAGGGTGAACCTGATGAATTGTTAAAGATGAAGCGCGTTCGTATACA
CCATACAACGACTGTAGAGCAGTTTGCTTCTTCAATTAAGTAA

Upstream 100 bases:

>100_bases
TCAAATGATATGATGAACAAGGGTATATCCCCACCACTCTTATAGCGGTGGGGATTTTAATGTCAATATGCAACATACTA
CACAATAGAAGGTGATTTTT

Downstream 100 bases:

>100_bases
ATATAAGGGCTCAATACATTTTGAGCTCTCTTTTTACTTTATATTTATATATATTTTTAGAATTTTCTTGTATTATATAT
AGTAAGAAATCTTTCAAATT

Product: polysaccharide deacetylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MRKYAAIALCTSAILAGCNTSNVSQEPKKEKKVQEVAIQKETLQEQGKISYTPITHESTNTSIHITDLKDSLNEVQYKIW
RTADGKERAKSFSSKEKEKQFTIPFDIKEFEGKRGEFQIEATGMKEDGKTIPLTKSTITFEQKVPVLMYHAIDDYHGQGI
KDLFVSPANFEAQMKHLKDNGYTLLTFERWGDINKVNKPIFVTFDDGMKNNMNAFRVLQKLKDDTFKPAATEYMIVDNVD
VEGALSTSEIKEMVDSGIFSVQSHTATHADLPKITNYEEELKGSKEKLEKITGKPVIAIAYPFGHVDDKIVTETKKYYQF
ATTTKPGQFITKGEPDELLKMKRVRIHHTTTVEQFASSIK

Sequences:

>Translated_360_residues
MRKYAAIALCTSAILAGCNTSNVSQEPKKEKKVQEVAIQKETLQEQGKISYTPITHESTNTSIHITDLKDSLNEVQYKIW
RTADGKERAKSFSSKEKEKQFTIPFDIKEFEGKRGEFQIEATGMKEDGKTIPLTKSTITFEQKVPVLMYHAIDDYHGQGI
KDLFVSPANFEAQMKHLKDNGYTLLTFERWGDINKVNKPIFVTFDDGMKNNMNAFRVLQKLKDDTFKPAATEYMIVDNVD
VEGALSTSEIKEMVDSGIFSVQSHTATHADLPKITNYEEELKGSKEKLEKITGKPVIAIAYPFGHVDDKIVTETKKYYQF
ATTTKPGQFITKGEPDELLKMKRVRIHHTTTVEQFASSIK
>Mature_360_residues
MRKYAAIALCTSAILAGCNTSNVSQEPKKEKKVQEVAIQKETLQEQGKISYTPITHESTNTSIHITDLKDSLNEVQYKIW
RTADGKERAKSFSSKEKEKQFTIPFDIKEFEGKRGEFQIEATGMKEDGKTIPLTKSTITFEQKVPVLMYHAIDDYHGQGI
KDLFVSPANFEAQMKHLKDNGYTLLTFERWGDINKVNKPIFVTFDDGMKNNMNAFRVLQKLKDDTFKPAATEYMIVDNVD
VEGALSTSEIKEMVDSGIFSVQSHTATHADLPKITNYEEELKGSKEKLEKITGKPVIAIAYPFGHVDDKIVTETKKYYQF
ATTTKPGQFITKGEPDELLKMKRVRIHHTTTVEQFASSIK

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 40826; Mature: 40826

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYAAIALCTSAILAGCNTSNVSQEPKKEKKVQEVAIQKETLQEQGKISYTPITHESTN
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
TSIHITDLKDSLNEVQYKIWRTADGKERAKSFSSKEKEKQFTIPFDIKEFEGKRGEFQIE
CEEEEEECHHHHHHHHEEEEECCCCHHHHHHHHCHHHCCEEECCCCHHHHCCCCCEEEEE
ATGMKEDGKTIPLTKSTITFEQKVPVLMYHAIDDYHGQGIKDLFVSPANFEAQMKHLKDN
ECCCCCCCCCCCEECCEEEECCCCCEEEEEEHHCCCCCCCHHHHCCCCCHHHHHHHHCCC
GYTLLTFERWGDINKVNKPIFVTFDDGMKNNMNAFRVLQKLKDDTFKPAATEYMIVDNVD
CCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCC
VEGALSTSEIKEMVDSGIFSVQSHTATHADLPKITNYEEELKGSKEKLEKITGKPVIAIA
CCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCEEEEE
YPFGHVDDKIVTETKKYYQFATTTKPGQFITKGEPDELLKMKRVRIHHTTTVEQFASSIK
ECCCCCCCHHHHHHHHHEEEECCCCCCCEEECCCHHHHHHHHHHHEEEHHHHHHHHHHCC
>Mature Secondary Structure
MRKYAAIALCTSAILAGCNTSNVSQEPKKEKKVQEVAIQKETLQEQGKISYTPITHESTN
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
TSIHITDLKDSLNEVQYKIWRTADGKERAKSFSSKEKEKQFTIPFDIKEFEGKRGEFQIE
CEEEEEECHHHHHHHHEEEEECCCCHHHHHHHHCHHHCCEEECCCCHHHHCCCCCEEEEE
ATGMKEDGKTIPLTKSTITFEQKVPVLMYHAIDDYHGQGIKDLFVSPANFEAQMKHLKDN
ECCCCCCCCCCCEECCEEEECCCCCEEEEEEHHCCCCCCCHHHHCCCCCHHHHHHHHCCC
GYTLLTFERWGDINKVNKPIFVTFDDGMKNNMNAFRVLQKLKDDTFKPAATEYMIVDNVD
CCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCC
VEGALSTSEIKEMVDSGIFSVQSHTATHADLPKITNYEEELKGSKEKLEKITGKPVIAIA
CCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCEEEEE
YPFGHVDDKIVTETKKYYQFATTTKPGQFITKGEPDELLKMKRVRIHHTTTVEQFASSIK
ECCCCCCCHHHHHHHHHEEEECCCCCCCEEECCCHHHHHHHHHHHEEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]