Click here to switch to the map view.

The map label for this gene is yfkA [H]

Identifier: 218231727

GI number: 218231727

Start: 472016

End: 473143

Strand: Reverse

Name: yfkA [H]

Synonym: BCB4264_A0486

Alternate gene names: 218231727

Gene position: 473143-472016 (Counterclockwise)

Preceding gene: 218233338

Following gene: 218231980

Centisome position: 8.73

GC content: 37.5

Gene sequence:

>1128_bases
ATGACGATATCACAAAAAATGAAGCCGATTACTCCTTCTTACGATCCATGGGAAGCGTATATGGACCTTGAAGAGTACGG
CAAACTACTATTAACAAATGTTGAATTTACAACGACGACGTTATGCAACATGCGCTGTGAGCATTGCGCTGTTGGTTACA
CGTTACAGCCGAAAGACCCAAATCCGCTTCCGATGGATCTTTTATTAAAACGATTAGATGAGATTCCTCATTTACGTTCT
TTAAGTATTACTGGCGGCGAACCTATGCTTTCAAAAAAATCCGTCGACAACTATGTAACACCACTCTTAAAATATGCCCA
TGAACGAGGCGTTCGCACTCAAATCAACTCTAACTTAACTATAGATTTAGCACGTTACGAACAGATTATTCCTTATTTAG
ACGTATTGCATATATCTCATAACTGGGGAACAATTGATGACTTCGTTGAAGGCGGATTTGCAATGATGGATCGTAAGCCT
ACTTACGAACAACGTGCAAAATTATTCGAAAGAATGATTACAAATAGTAAGGCTCTATCAGATGCAGGTGTACTTGTATC
GGCCGAAACAATGCTAAACAAAAGAACTCTACCACATATTGAACATATTCACCGCCAAATCGTCGAAGAGATGGGCTGTA
AACGTCATGAAGTTCATCCAATGTATCCAAGTGACTTCGCGAGTAATCTAGAGATTTTAACAAAAGCTGAAATTCGTGAT
GCGATTGAACATTTACTAGAAATTCGCGATGAAAATGTATGGATGCTATTTGGAACTTTACCTTTCTATGCTTGTAGCGA
TGACGAAAAAGACATAGCTACATTTAGAAAATTGCAAGAGAGCAAAAATGTAACTGTTCGTAATGATCCAGATGGCCGTT
CTCGTTTAAATGTAAATATTTTCGATGGAAATATTATTGTGACGGACTTTGGTGATGTTCCACTTCTAGGAAACATACAA
ACAAACACATTACAAGAAGCGTATGAAAAATGGAGCACTTCAAAAACAGCAAAATCATTAAGCTGCCACTGTCCTGCAGT
AAAATGTCTTGGACCAAATGTTCTTGTAAAAAACAGCTACTATCCGACAGAAGATTTCTTATCAAAAACAGCAAACATTA
CATTATAA

Upstream 100 bases:

>100_bases
CTCTTTCCATGCTAAAAAGTTTCACTTTATAAAAAGCACATATTCTTCTATTATAGAGAATGGACAAATTGTTATTTCAA
TAGTCAAAGGAGTATTTCAT

Downstream 100 bases:

>100_bases
AAAAAACGTCAGCTTATAAGCTGACGTTTTTTATGTTATTGCGAGTGAGAAGAAGAAATAAATTTAAAAAACAAATGATC
ATGAATTGGAATTGCCGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MTISQKMKPITPSYDPWEAYMDLEEYGKLLLTNVEFTTTTLCNMRCEHCAVGYTLQPKDPNPLPMDLLLKRLDEIPHLRS
LSITGGEPMLSKKSVDNYVTPLLKYAHERGVRTQINSNLTIDLARYEQIIPYLDVLHISHNWGTIDDFVEGGFAMMDRKP
TYEQRAKLFERMITNSKALSDAGVLVSAETMLNKRTLPHIEHIHRQIVEEMGCKRHEVHPMYPSDFASNLEILTKAEIRD
AIEHLLEIRDENVWMLFGTLPFYACSDDEKDIATFRKLQESKNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDVPLLGNIQ
TNTLQEAYEKWSTSKTAKSLSCHCPAVKCLGPNVLVKNSYYPTEDFLSKTANITL

Sequences:

>Translated_375_residues
MTISQKMKPITPSYDPWEAYMDLEEYGKLLLTNVEFTTTTLCNMRCEHCAVGYTLQPKDPNPLPMDLLLKRLDEIPHLRS
LSITGGEPMLSKKSVDNYVTPLLKYAHERGVRTQINSNLTIDLARYEQIIPYLDVLHISHNWGTIDDFVEGGFAMMDRKP
TYEQRAKLFERMITNSKALSDAGVLVSAETMLNKRTLPHIEHIHRQIVEEMGCKRHEVHPMYPSDFASNLEILTKAEIRD
AIEHLLEIRDENVWMLFGTLPFYACSDDEKDIATFRKLQESKNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDVPLLGNIQ
TNTLQEAYEKWSTSKTAKSLSCHCPAVKCLGPNVLVKNSYYPTEDFLSKTANITL
>Mature_374_residues
TISQKMKPITPSYDPWEAYMDLEEYGKLLLTNVEFTTTTLCNMRCEHCAVGYTLQPKDPNPLPMDLLLKRLDEIPHLRSL
SITGGEPMLSKKSVDNYVTPLLKYAHERGVRTQINSNLTIDLARYEQIIPYLDVLHISHNWGTIDDFVEGGFAMMDRKPT
YEQRAKLFERMITNSKALSDAGVLVSAETMLNKRTLPHIEHIHRQIVEEMGCKRHEVHPMYPSDFASNLEILTKAEIRDA
IEHLLEIRDENVWMLFGTLPFYACSDDEKDIATFRKLQESKNVTVRNDPDGRSRLNVNIFDGNIIVTDFGDVPLLGNIQT
NTLQEAYEKWSTSKTAKSLSCHCPAVKCLGPNVLVKNSYYPTEDFLSKTANITL

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197
- InterPro:   IPR014866 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08756 YfkB [H]

EC number: NA

Molecular weight: Translated: 42818; Mature: 42686

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISQKMKPITPSYDPWEAYMDLEEYGKLLLTNVEFTTTTLCNMRCEHCAVGYTLQPKDP
CCCCCCCCCCCCCCCHHHHHCCHHHCCCEEEECCCHHHHHHHHCCHHHEEECCEECCCCC
NPLPMDLLLKRLDEIPHLRSLSITGGEPMLSKKSVDNYVTPLLKYAHERGVRTQINSNLT
CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEE
IDLARYEQIIPYLDVLHISHNWGTIDDFVEGGFAMMDRKPTYEQRAKLFERMITNSKALS
EEHHHHHHHHHHHHEEEEECCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCHHCC
DAGVLVSAETMLNKRTLPHIEHIHRQIVEEMGCKRHEVHPMYPSDFASNLEILTKAEIRD
CCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHH
AIEHLLEIRDENVWMLFGTLPFYACSDDEKDIATFRKLQESKNVTVRNDPDGRSRLNVNI
HHHHHHHHCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHCCCCEEECCCCCCCEEEEEE
FDGNIIVTDFGDVPLLGNIQTNTLQEAYEKWSTSKTAKSLSCHCPAVKCLGPNVLVKNSY
EECEEEEECCCCCCEECCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCCEEEECCC
YPTEDFLSKTANITL
CCCHHHHHHHCCCCC
>Mature Secondary Structure 
TISQKMKPITPSYDPWEAYMDLEEYGKLLLTNVEFTTTTLCNMRCEHCAVGYTLQPKDP
CCCCCCCCCCCCCCHHHHHCCHHHCCCEEEECCCHHHHHHHHCCHHHEEECCEECCCCC
NPLPMDLLLKRLDEIPHLRSLSITGGEPMLSKKSVDNYVTPLLKYAHERGVRTQINSNLT
CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEE
IDLARYEQIIPYLDVLHISHNWGTIDDFVEGGFAMMDRKPTYEQRAKLFERMITNSKALS
EEHHHHHHHHHHHHEEEEECCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCHHCC
DAGVLVSAETMLNKRTLPHIEHIHRQIVEEMGCKRHEVHPMYPSDFASNLEILTKAEIRD
CCCEEEEHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHH
AIEHLLEIRDENVWMLFGTLPFYACSDDEKDIATFRKLQESKNVTVRNDPDGRSRLNVNI
HHHHHHHHCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHCCCCEEECCCCCCCEEEEEE
FDGNIIVTDFGDVPLLGNIQTNTLQEAYEKWSTSKTAKSLSCHCPAVKCLGPNVLVKNSY
EECEEEEECCCCCCEECCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCCEEEECCC
YPTEDFLSKTANITL
CCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]