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The map label for this gene is yndE [H]

Identifier: 218231722

GI number: 218231722

Start: 790278

End: 791387

Strand: Reverse

Name: yndE [H]

Synonym: BCB4264_A0817

Alternate gene names: 218231722

Gene position: 791387-790278 (Counterclockwise)

Preceding gene: 218232447

Following gene: 218234887

Centisome position: 14.6

GC content: 30.9

Gene sequence:

>1110_bases
ATGAATACAATGAATAAAACAAAAACTGTCTCTCCATATTTTGCATTTATTTTATTGCATTCTCTCCAAATCGGAATAGG
AATTCTCGGATATCAGCGTGTAATTTTGAAAAATGCAGGTTATGATGCTTGGATTTCTCTTATTATTGCAGGTATTGCAA
CTCATATTGTACTGTTTTGTATGTTAAAAATGCTTGAAAAAGACGGAGATTTAATTAGCATTCATACAACAACCTTTGGA
AAATGGATTGGCTCTATATTTTCTGTAATTTTCACTCTCTATTGCTTATTATTTTGCCTTACTGTTCTTCGTACATATAT
GGAAGTAATACAAGTTTGGATCTTTCCTACCATTAAGTTATGGAAACTTACCCTAATGTTTTTATTGGTCACTTACTACA
TTATAAAAGGTGGCTTCCGTTCTGTGACAGGGATATGTTTTTGGGGTATTGTTCTTCCTATGTTCGTTGTATTCTTTTTA
GTCTATCCGATGAAGTATGCACATTTTCGTAATATTTTACCTATTTTTACGCATTCCCCTTTCGACATACTTGTGTCAGC
AAAACAATCTGCATTAGAATTTCTCGGATTTGAAACAATTCTTATCTTCTATCCCTTTATTGAAAAAGGAAAATCTTTAA
AAAGATGGGCTCACGCAGGGATTGTTTTTAGCACTCTAATTTATGTAGTTTTAGCTATTGTATCATTTATGTATTATAGT
GAAGGACAATTGAATCACACTATTTGGCCTACTTTAACGATGTTAAAAATAATTAAAGTTCCTTTTATTCAACGGTTCGA
ATATATTATTATTTTTGTTTGGTTTTTAATAATTTTGCCGAATCTTTGTTTAACTATTTGGTCATCATGTCAAACGATGA
AGCGTTCCTTTCATATTTCATTTAAATTTACACTACCATTTTTTATTTTCATCGTTTTTACAGCTTCTTTATTTTTTAAA
AATCGGGAAAGTATCAACGCATTAAATACTGTACTATCTCAAGCGGGATTGTATATTGTATACGCTTATATCCCAATTTT
ATTTCTAGTTCATTCGCTAAGGTGGCGCTTCAAAAATCAGTCAAAAAAATCTTCAACCGATACACCGTAA

Upstream 100 bases:

>100_bases
AAACAAATTCGAAATATGTATCAAAATGTAGCGGTGGATATAAATTTAGATCTTAATATTGTACAATCTGGAATCGGGGA
ATAGTGAGGTGAAATGAGCA

Downstream 100 bases:

>100_bases
TCTCTGATACAATTTGATTAATACATTTGTAAAGGGGACAAGCGAATGAAAAAGTATGTATTTTCTTTACTTGCAGTACT
AAGCTTAATTCTTGCTGGAT

Product: spore germination protein, GerB family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MNTMNKTKTVSPYFAFILLHSLQIGIGILGYQRVILKNAGYDAWISLIIAGIATHIVLFCMLKMLEKDGDLISIHTTTFG
KWIGSIFSVIFTLYCLLFCLTVLRTYMEVIQVWIFPTIKLWKLTLMFLLVTYYIIKGGFRSVTGICFWGIVLPMFVVFFL
VYPMKYAHFRNILPIFTHSPFDILVSAKQSALEFLGFETILIFYPFIEKGKSLKRWAHAGIVFSTLIYVVLAIVSFMYYS
EGQLNHTIWPTLTMLKIIKVPFIQRFEYIIIFVWFLIILPNLCLTIWSSCQTMKRSFHISFKFTLPFFIFIVFTASLFFK
NRESINALNTVLSQAGLYIVYAYIPILFLVHSLRWRFKNQSKKSSTDTP

Sequences:

>Translated_369_residues
MNTMNKTKTVSPYFAFILLHSLQIGIGILGYQRVILKNAGYDAWISLIIAGIATHIVLFCMLKMLEKDGDLISIHTTTFG
KWIGSIFSVIFTLYCLLFCLTVLRTYMEVIQVWIFPTIKLWKLTLMFLLVTYYIIKGGFRSVTGICFWGIVLPMFVVFFL
VYPMKYAHFRNILPIFTHSPFDILVSAKQSALEFLGFETILIFYPFIEKGKSLKRWAHAGIVFSTLIYVVLAIVSFMYYS
EGQLNHTIWPTLTMLKIIKVPFIQRFEYIIIFVWFLIILPNLCLTIWSSCQTMKRSFHISFKFTLPFFIFIVFTASLFFK
NRESINALNTVLSQAGLYIVYAYIPILFLVHSLRWRFKNQSKKSSTDTP
>Mature_369_residues
MNTMNKTKTVSPYFAFILLHSLQIGIGILGYQRVILKNAGYDAWISLIIAGIATHIVLFCMLKMLEKDGDLISIHTTTFG
KWIGSIFSVIFTLYCLLFCLTVLRTYMEVIQVWIFPTIKLWKLTLMFLLVTYYIIKGGFRSVTGICFWGIVLPMFVVFFL
VYPMKYAHFRNILPIFTHSPFDILVSAKQSALEFLGFETILIFYPFIEKGKSLKRWAHAGIVFSTLIYVVLAIVSFMYYS
EGQLNHTIWPTLTMLKIIKVPFIQRFEYIIIFVWFLIILPNLCLTIWSSCQTMKRSFHISFKFTLPFFIFIVFTASLFFK
NRESINALNTVLSQAGLYIVYAYIPILFLVHSLRWRFKNQSKKSSTDTP

Specific function: Involved in the germinative response to L-alanine. Could be an amino acid transporter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004761 [H]

Pfam domain/function: PF03845 Spore_permease [H]

EC number: NA

Molecular weight: Translated: 42936; Mature: 42936

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCC
>Mature Secondary Structure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CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]