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The map label for this gene is yrbD [H]

Identifier: 218231492

GI number: 218231492

Start: 665435

End: 666898

Strand: Direct

Name: yrbD [H]

Synonym: BCB4264_A0673

Alternate gene names: 218231492

Gene position: 665435-666898 (Clockwise)

Preceding gene: 218233692

Following gene: 218230859

Centisome position: 12.28

GC content: 38.73

Gene sequence:

>1464_bases
ATGTTGGAAACTTTCGTAAATTGGTTAAATAATATTGTTTGGAGTCCAGCACTTGTTTATTTATGTTTAGGAGTAGGTTT
ATATTTTTCTATTCGAACGAAGTTTTTACAAGTAAGGCACGTAGGAGAAATGGTGAAGCTGACATTTCAAGGAGAAAAAT
CAGAGGCTGGTGTTTCTTCATTCCAAGCGTTAGCACTTTCGTTATCAGGACGTGTTGGAACAGGAAATATCGCTGGGGTA
GCAACAGCCGTTGCATTCGGTGGACCAGGAGCTGTATTTTGGATGTGGGCAGTAGCCTTTTTAGGAGCAGGATCAGCTTA
TGTAGAATCAACACTCGCGCAAATATATAAGACGAAACATCAAGGACAATTTCGTGGTGGACCTGCTTATTACATTGAAA
AAGGTTTAGGTGTGAAATGGTATGCTTTAGTATTCGTTGCAGCGACAATTCTTGCAACGGGGCTTTTACTACCAGGTGTG
CAAGCAAATAGTATTGCTGTAAGTTTAGAAACTGCTTTTGGTATTAATACTACCGCATCAGGGGCTATATTAGTTGTCGT
ATTAGCTCTTATCATTTTCGGTGGAGTAAAGCGAATTGTTAACGTAGCGCAAGTTGTCGTACCGTTTATGGCAATAGGCT
ATATTTTAGTAGCTTGCGTCATTGTTGCTATGAATATTGAAAAATTGCCAGAAGCATTTATGTTAATTATAAGAAGTGCA
TTTGCATTAGAAGCTGCTTTCGGTGGTATTATCGGTTTAGCAATCTCTTGGGGGGTAAAACGTGGTATTTATTCCAATGA
AGCAGGACAAGGGACTGGACCACACGCAGCAGCAGCAGCCGAAGTATCACATCCAGCTAAGCAAGGTTTAGTGCAAGCAT
TTTCCGTTTACATTGATACATTATTTGTTTGTTCAGCAACAGCATTTATGATGATTATTACAGGCATGTATAACGTATTT
GATGCAAGCGGAAAAAACTTTATCGTTAATAAACTAAATGGTGCTCAGCCAGGACCAGGATATACACAGGCGGCGGTAGA
ATCTGTTTTCCCTGGATTTGGAAACGGTTTCGTTGCAATCTCGTTATTATTCTTCGCGTTTACAACAATTATGGCGTATT
ACTACATTGCAGAAACGAATATTGCATACTTAAATCGTGATAAAGACCGTCCTTGGATGTCTATGGTACTAAAGTTTGTA
TTTTTAGGAGCTGTATTCTATGGATGTATAAAAACAGCAGCAACGGCTTGGGCTTTAGGCGACATTGGGGTAGGAATTAT
GGCATGGGTAAATATCATTGCGATTTTACTATTACAAAAACCTGCATTAGTCGCATTAAAGGATTATGAAAAACAGAAAA
AAGAAGGAAAAGATCCAGTATTCGATCCAGGGCCATTAGGAATTAAAAATGCTGATTTTTGGGAGCATGAATACGGGAAA
GATAAGAAAGAAGAAGTATCTTAA

Upstream 100 bases:

>100_bases
AAAAATATGTTTACTTTATTAAAATAATATTGTCCTAGATTCGGTATGCACTTATAATTTTATATATATTCTGAATATTC
TTTATAAAGGAGGAGGGGGA

Downstream 100 bases:

>100_bases
CAGAATAGAAATGAAGAAGCAAAGGGGAAACCCTTTGCTTTTTTTTATGGACAAATTGAAGCTAAAAGTTATTTTTGGGA
CTATTTTTGAATATAAAAAG

Product: sodium/alanine symporter family protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MLETFVNWLNNIVWSPALVYLCLGVGLYFSIRTKFLQVRHVGEMVKLTFQGEKSEAGVSSFQALALSLSGRVGTGNIAGV
ATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGV
QANSIAVSLETAFGINTTASGAILVVVLALIIFGGVKRIVNVAQVVVPFMAIGYILVACVIVAMNIEKLPEAFMLIIRSA
FALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVF
DASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTIMAYYYIAETNIAYLNRDKDRPWMSMVLKFV
FLGAVFYGCIKTAATAWALGDIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGK
DKKEEVS

Sequences:

>Translated_487_residues
MLETFVNWLNNIVWSPALVYLCLGVGLYFSIRTKFLQVRHVGEMVKLTFQGEKSEAGVSSFQALALSLSGRVGTGNIAGV
ATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGV
QANSIAVSLETAFGINTTASGAILVVVLALIIFGGVKRIVNVAQVVVPFMAIGYILVACVIVAMNIEKLPEAFMLIIRSA
FALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVF
DASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTIMAYYYIAETNIAYLNRDKDRPWMSMVLKFV
FLGAVFYGCIKTAATAWALGDIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGK
DKKEEVS
>Mature_487_residues
MLETFVNWLNNIVWSPALVYLCLGVGLYFSIRTKFLQVRHVGEMVKLTFQGEKSEAGVSSFQALALSLSGRVGTGNIAGV
ATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGV
QANSIAVSLETAFGINTTASGAILVVVLALIIFGGVKRIVNVAQVVVPFMAIGYILVACVIVAMNIEKLPEAFMLIIRSA
FALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVF
DASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTIMAYYYIAETNIAYLNRDKDRPWMSMVLKFV
FLGAVFYGCIKTAATAWALGDIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGK
DKKEEVS

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=495, Percent_Identity=36.7676767676768, Blast_Score=290, Evalue=2e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 52149; Mature: 52149

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETFVNWLNNIVWSPALVYLCLGVGLYFSIRTKFLQVRHVGEMVKLTFQGEKSEAGVSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHH
FQALALSLSGRVGTGNIAGVATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKH
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
QGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQANSIAVSLETAFGINTTAS
CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCC
GAILVVVLALIIFGGVKRIVNVAQVVVPFMAIGYILVACVIVAMNIEKLPEAFMLIIRSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
LFVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAI
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
SLLFFAFTTIMAYYYIAETNIAYLNRDKDRPWMSMVLKFVFLGAVFYGCIKTAATAWALG
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCC
DKKEEVS
CCHHCCC
>Mature Secondary Structure
MLETFVNWLNNIVWSPALVYLCLGVGLYFSIRTKFLQVRHVGEMVKLTFQGEKSEAGVSS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHH
FQALALSLSGRVGTGNIAGVATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKH
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
QGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQANSIAVSLETAFGINTTAS
CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCC
GAILVVVLALIIFGGVKRIVNVAQVVVPFMAIGYILVACVIVAMNIEKLPEAFMLIIRSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
LFVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAI
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
SLLFFAFTTIMAYYYIAETNIAYLNRDKDRPWMSMVLKFVFLGAVFYGCIKTAATAWALG
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCC
DKKEEVS
CCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]