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The map label for this gene is yckA [H]

Identifier: 209552184

GI number: 209552184

Start: 293496

End: 294149

Strand: Reverse

Name: yckA [H]

Synonym: Rleg2_6342

Alternate gene names: 209552184

Gene position: 294149-293496 (Counterclockwise)

Preceding gene: 209552185

Following gene: 209552183

Centisome position: 95.27

GC content: 56.88

Gene sequence:

>654_bases
ATGACGGGGGTAGGCGAGTACTTTCCACTCATCGCCAAGGGACTGTCTATGACATTCCTTGTGGCGGTGACATGTTTCGC
CCTCGGTGCCATTCTAGCGTTGCCCGTTTCATTTGCGCGGCTATCCGAGAACGGCTTCGCCCGCGCTTTTGCCTCCACCT
TCATTTCGGTGGTGCGAGGTGTTCCACCTATTACGTGGCTGTTTCTGATCTTTTATGGACTACCGCAACTCGGACTGAAA
TTCTCTAGCCTCTCCGCAGCGGTCGTCGGTCTGACGATGATGTGCACGGCATATATCGCCGAGTTCTACCGTTCCGGATG
GCTGGCAATGCCCGCCGGGCAGATCGAGGCAGCAAAAGCCCTCGGACTTACTGAGTTTGCGGCTTTCAGAAAGGTCATTG
CACCGCAGGTCTTTGTCATCGTCCTTCCCATGGCGATTACCTATTTCATCGCCCTTCTTAAGAACTCCGCGGTCGTATCA
GTGATCGGCGTCAGTGACGTCACCGACCGCGCGCTTAGCGAAAGTCGGTCTGCCCCTGACCCGTTCAATGTCTTCATCGC
GGCCGGCTTCGTCTACATGGCCGTCAGCGTACCAATTGGCCTGGCAGGCCGCTTCACCAGCCCTTGGGTGGCTCGACGTT
TCGGGATGGCTTGA

Upstream 100 bases:

>100_bases
TGGCAGACGGCAAGGCCGTCGAAGTGGGTGAACCGAAACAGGTCCTCAGAGAGCCGATTCACGAGCGGACTCAGAAGTTC
CTGAAGATGGTGTTCGATCG

Downstream 100 bases:

>100_bases
TGGAACTCGTTCTTCTTTTTTTCGCCAAAGCCGTTCCCGGACTTCTCGTCAGCCTGCAGGTCACAATCGGAGTCGTCGCG
ATCGGCATTTCGCTTGGCCT

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTGVGEYFPLIAKGLSMTFLVAVTCFALGAILALPVSFARLSENGFARAFASTFISVVRGVPPITWLFLIFYGLPQLGLK
FSSLSAAVVGLTMMCTAYIAEFYRSGWLAMPAGQIEAAKALGLTEFAAFRKVIAPQVFVIVLPMAITYFIALLKNSAVVS
VIGVSDVTDRALSESRSAPDPFNVFIAAGFVYMAVSVPIGLAGRFTSPWVARRFGMA

Sequences:

>Translated_217_residues
MTGVGEYFPLIAKGLSMTFLVAVTCFALGAILALPVSFARLSENGFARAFASTFISVVRGVPPITWLFLIFYGLPQLGLK
FSSLSAAVVGLTMMCTAYIAEFYRSGWLAMPAGQIEAAKALGLTEFAAFRKVIAPQVFVIVLPMAITYFIALLKNSAVVS
VIGVSDVTDRALSESRSAPDPFNVFIAAGFVYMAVSVPIGLAGRFTSPWVARRFGMA
>Mature_216_residues
TGVGEYFPLIAKGLSMTFLVAVTCFALGAILALPVSFARLSENGFARAFASTFISVVRGVPPITWLFLIFYGLPQLGLKF
SSLSAAVVGLTMMCTAYIAEFYRSGWLAMPAGQIEAAKALGLTEFAAFRKVIAPQVFVIVLPMAITYFIALLKNSAVVSV
IGVSDVTDRALSESRSAPDPFNVFIAAGFVYMAVSVPIGLAGRFTSPWVARRFGMA

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=189, Percent_Identity=31.2169312169312, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788646, Length=196, Percent_Identity=29.0816326530612, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787087, Length=221, Percent_Identity=28.0542986425339, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787030, Length=164, Percent_Identity=33.5365853658537, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786873, Length=202, Percent_Identity=29.2079207920792, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082239, Length=171, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=27.6190476190476, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994930, Length=85, Percent_Identity=36.4705882352941, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786874, Length=207, Percent_Identity=24.1545893719807, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23161; Mature: 23030

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGVGEYFPLIAKGLSMTFLVAVTCFALGAILALPVSFARLSENGFARAFASTFISVVRG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
VPPITWLFLIFYGLPQLGLKFSSLSAAVVGLTMMCTAYIAEFYRSGWLAMPAGQIEAAKA
CCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHH
LGLTEFAAFRKVIAPQVFVIVLPMAITYFIALLKNSAVVSVIGVSDVTDRALSESRSAPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCC
PFNVFIAAGFVYMAVSVPIGLAGRFTSPWVARRFGMA
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
TGVGEYFPLIAKGLSMTFLVAVTCFALGAILALPVSFARLSENGFARAFASTFISVVRG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
VPPITWLFLIFYGLPQLGLKFSSLSAAVVGLTMMCTAYIAEFYRSGWLAMPAGQIEAAKA
CCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHH
LGLTEFAAFRKVIAPQVFVIVLPMAITYFIALLKNSAVVSVIGVSDVTDRALSESRSAPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCC
PFNVFIAAGFVYMAVSVPIGLAGRFTSPWVARRFGMA
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]