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The map label for this gene is yecS [H]

Identifier: 209552183

GI number: 209552183

Start: 292846

End: 293496

Strand: Reverse

Name: yecS [H]

Synonym: Rleg2_6341

Alternate gene names: 209552183

Gene position: 293496-292846 (Counterclockwise)

Preceding gene: 209552184

Following gene: 209552182

Centisome position: 95.06

GC content: 56.53

Gene sequence:

>651_bases
ATGGAACTCGTTCTTCTTTTTTTCGCCAAAGCCGTTCCCGGACTTCTCGTCAGCCTGCAGGTCACAATCGGAGTCGTCGC
GATCGGCATTTCGCTTGGCCTCACTCTCGCTCTGGGTCTTGTCAACAATCATGCGGGAATCCGGACGTTTGCTCTCGTTG
CCGTCGAAATCTTCCGTGGTATTCCAGCCCTCGTCATGCTGTACATCGTCTATTTCGGCCTGCCACAATTCGAGGTTGTC
ATGGATGCGATCCCGTCTGCTTCCGTGGCACTCGGCATCAGCATGGGCGGCTTCCTCGCGGATGTGTTCAAGGCAGGAAT
TCTGGCGATTCCACTTGGGCAGCGGGAAGCGGCGGCCGCCCTCGGCCTTAGCCGGTCGACGGCGTTTACACGGGTAATCC
TTCCGCAAACCATCCGGATCGTAACGCCGCCGGTACTCGGTTACGTCATCAGTTACTTTCAGGCGACCGCGCTTGCCTAC
ACCATCGCGGTTCCCGAACTGATGAGCCGATCCTACACCGTGGCCGCAGACAACTTTCGATTCCTCGAAGTGCTCACGAT
GGCAGGCTTTCTTTACGCAGTTATCTGCATTCCCTCAGCGCGCTGGGTCAATCGGTTGAGCAACCGCGATGAATTCGAAT
CCAAGCATTAA

Upstream 100 bases:

>100_bases
TCATCGCGGCCGGCTTCGTCTACATGGCCGTCAGCGTACCAATTGGCCTGGCAGGCCGCTTCACCAGCCCTTGGGTGGCT
CGACGTTTCGGGATGGCTTG

Downstream 100 bases:

>100_bases
AAAGCAGCTTCCGGAACCAACCGGGGGACAACACCTATCCGAAAAATTGGGAGTAACTCATGACGATAACTTCACGACAT
AATGTAGCTTCGATGATGTT

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MELVLLFFAKAVPGLLVSLQVTIGVVAIGISLGLTLALGLVNNHAGIRTFALVAVEIFRGIPALVMLYIVYFGLPQFEVV
MDAIPSASVALGISMGGFLADVFKAGILAIPLGQREAAAALGLSRSTAFTRVILPQTIRIVTPPVLGYVISYFQATALAY
TIAVPELMSRSYTVAADNFRFLEVLTMAGFLYAVICIPSARWVNRLSNRDEFESKH

Sequences:

>Translated_216_residues
MELVLLFFAKAVPGLLVSLQVTIGVVAIGISLGLTLALGLVNNHAGIRTFALVAVEIFRGIPALVMLYIVYFGLPQFEVV
MDAIPSASVALGISMGGFLADVFKAGILAIPLGQREAAAALGLSRSTAFTRVILPQTIRIVTPPVLGYVISYFQATALAY
TIAVPELMSRSYTVAADNFRFLEVLTMAGFLYAVICIPSARWVNRLSNRDEFESKH
>Mature_216_residues
MELVLLFFAKAVPGLLVSLQVTIGVVAIGISLGLTLALGLVNNHAGIRTFALVAVEIFRGIPALVMLYIVYFGLPQFEVV
MDAIPSASVALGISMGGFLADVFKAGILAIPLGQREAAAALGLSRSTAFTRVILPQTIRIVTPPVLGYVISYFQATALAY
TIAVPELMSRSYTVAADNFRFLEVLTMAGFLYAVICIPSARWVNRLSNRDEFESKH

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=204, Percent_Identity=36.2745098039216, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=31.4285714285714, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1786873, Length=204, Percent_Identity=31.3725490196078, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788645, Length=192, Percent_Identity=29.6875, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87082239, Length=201, Percent_Identity=27.363184079602, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI48994930, Length=120, Percent_Identity=30, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=25.4464285714286, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787086, Length=199, Percent_Identity=24.6231155778894, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788646, Length=197, Percent_Identity=22.8426395939086, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23195; Mature: 23195

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVLLFFAKAVPGLLVSLQVTIGVVAIGISLGLTLALGLVNNHAGIRTFALVAVEIFRG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
IPALVMLYIVYFGLPQFEVVMDAIPSASVALGISMGGFLADVFKAGILAIPLGQREAAAA
CHHHHHHHHHHHCCCHHHHHHHHCCCCHHEEHHHHHHHHHHHHHCCEEEECCCCHHHHHH
LGLSRSTAFTRVILPQTIRIVTPPVLGYVISYFQATALAYTIAVPELMSRSYTVAADNFR
HCCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHH
FLEVLTMAGFLYAVICIPSARWVNRLSNRDEFESKH
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MELVLLFFAKAVPGLLVSLQVTIGVVAIGISLGLTLALGLVNNHAGIRTFALVAVEIFRG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
IPALVMLYIVYFGLPQFEVVMDAIPSASVALGISMGGFLADVFKAGILAIPLGQREAAAA
CHHHHHHHHHHHCCCHHHHHHHHCCCCHHEEHHHHHHHHHHHHHCCEEEECCCCHHHHHH
LGLSRSTAFTRVILPQTIRIVTPPVLGYVISYFQATALAYTIAVPELMSRSYTVAADNFR
HCCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHH
FLEVLTMAGFLYAVICIPSARWVNRLSNRDEFESKH
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]