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The map label for this gene is abfA [H]

Identifier: 209552099

GI number: 209552099

Start: 191326

End: 192807

Strand: Reverse

Name: abfA [H]

Synonym: Rleg2_6250

Alternate gene names: 209552099

Gene position: 192807-191326 (Counterclockwise)

Preceding gene: 209552100

Following gene: 209552098

Centisome position: 62.45

GC content: 54.05

Gene sequence:

>1482_bases
ATGGAGGAAAACTTGACAGGTGGTTTTGCGCAAGTGAGAGCGTCGAAGCAGCAGGAGTCTCGGAGATGGAATCCGATGAT
ACTCGGGCATTTTGTCGAACATTTTCACAATCAAATCTATGGCGGCGTCTTCGATCCGGGTTCGCATCTAGCGGACGACC
GAGGTTTCCGTCTCGACGTCATCGAAGCGTTGAAAGAATTACGGCCCCCGATTGTTAGGTGGCCCGGCGGCAATTTCGTT
TCGGATTACCATTGGTATGAGGCCGTGGGTGCAAACCGGCTGCCAAGCTACAATAAGGCTTGGCGTGTGGCCGAGCCCAA
CACTTTTGGGACCGACGAATTTATTGAGTGGTGCCGGAGACTAAATTGCGAGCCCTACATCTGCACCAATGCGGGTAGTG
GCACGCCCGAAGAAATGAGCAATTGGCTCGAATACTGCAACGGGCATCTCGAAACCCGATACGCAAATTTGCGTCGAAAG
AGCGGATATGAACGTCCACACGCAGTAAAGTATTGGGGAATCGGAAACGAGAGTTATGCAGATTTCCAGATCGGCGCCAA
AACTATAGGGGAGTGGGGTCCTTATGTCGCCGAAGCGGCAAAAATGATGCGTTCGGTGGACGACACTATCGTCCTTTCAG
CGGCTGCGGTACCCGATACGGAATGGACCCTAAACCTCCTGAAACACGCAGGTCGCTATCTCGACCTGGTTTCGATACAC
GGCTACTGGGATGATCTGGAACACCACGACGAGCCGTCCGACTATCTGACGGCGGTCCTTCGCTCTCACGAGCCGGAGAA
GATGATCGACGGCGCACGTGAGATCATCGCACTGGCGGGGCTGGAAGGACAAATTCAAATAGCATTTGATGAGTGGAACC
TTCGCGGGTGGCATCACCCTCGTGGGACGCATGAAGAAAAGATAAGGGCTCGTGACAGGAACGACCGAGCTGAAACCTAC
ACGATGGCGGATGCTCTGTTCACAGCCTCGTTCCTGAATTCATGCCTTCGTAACAGCGATATCGTGTCGATGGCGAACGT
TTCGCCGAGCATCAATGCAAGAGGACCGCTGTACGTCCATGGCGGCGGCGTTGTACGCCGCTCGACATTCTACGTTTTAA
AAGCCTATAACGATCACTTGAAACCGTGGATCGGATCGACAAGCGTAAATGGCCCGACACTGCGTCATGCAGGGGCCGAA
ATAGCAACGATCGAGGCACTGACCTCGTCCGACGGGGCTTCTCGCAACTTATTCATTGTCAATCGCGACCCTCACGACGC
GATCCTTTGCGAACTATATTTCGACAATCACCGGTTGGATGGCGACCGAGTAGTCACTGTTATCTCGGGCCTAACGGCCG
ACTCCTTTAACACGGTAGAAGCCCCTGACATGGTGTCACCGAGGGCTCAACCTCTGGTGAGGCAAGGCGGAGGTTACTAC
ATTCCTCCTCATTCTCTCTGCGTGCTGGAAGTTCCCGGCTGA

Upstream 100 bases:

>100_bases
AAGAGCTGCACTGGGATAGCGGCGACCCAACGCAAAAGTCCAGAAACCTTATCTCGCACATCGAAGTCCTCGTTGTGGTG
AGAACGATAAAACTCATCCA

Downstream 100 bases:

>100_bases
AGCAAAATTGGAGTATTCGGTGGACCGAGCTCGGTTCTTGGTCCATCCGCCTAGACATCCGCAGTTCCGCGCTTTCGCTT
GGCGCTAACGGGACATATGG

Product: alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: Arabinosidase [H]

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MEENLTGGFAQVRASKQQESRRWNPMILGHFVEHFHNQIYGGVFDPGSHLADDRGFRLDVIEALKELRPPIVRWPGGNFV
SDYHWYEAVGANRLPSYNKAWRVAEPNTFGTDEFIEWCRRLNCEPYICTNAGSGTPEEMSNWLEYCNGHLETRYANLRRK
SGYERPHAVKYWGIGNESYADFQIGAKTIGEWGPYVAEAAKMMRSVDDTIVLSAAAVPDTEWTLNLLKHAGRYLDLVSIH
GYWDDLEHHDEPSDYLTAVLRSHEPEKMIDGAREIIALAGLEGQIQIAFDEWNLRGWHHPRGTHEEKIRARDRNDRAETY
TMADALFTASFLNSCLRNSDIVSMANVSPSINARGPLYVHGGGVVRRSTFYVLKAYNDHLKPWIGSTSVNGPTLRHAGAE
IATIEALTSSDGASRNLFIVNRDPHDAILCELYFDNHRLDGDRVVTVISGLTADSFNTVEAPDMVSPRAQPLVRQGGGYY
IPPHSLCVLEVPG

Sequences:

>Translated_493_residues
MEENLTGGFAQVRASKQQESRRWNPMILGHFVEHFHNQIYGGVFDPGSHLADDRGFRLDVIEALKELRPPIVRWPGGNFV
SDYHWYEAVGANRLPSYNKAWRVAEPNTFGTDEFIEWCRRLNCEPYICTNAGSGTPEEMSNWLEYCNGHLETRYANLRRK
SGYERPHAVKYWGIGNESYADFQIGAKTIGEWGPYVAEAAKMMRSVDDTIVLSAAAVPDTEWTLNLLKHAGRYLDLVSIH
GYWDDLEHHDEPSDYLTAVLRSHEPEKMIDGAREIIALAGLEGQIQIAFDEWNLRGWHHPRGTHEEKIRARDRNDRAETY
TMADALFTASFLNSCLRNSDIVSMANVSPSINARGPLYVHGGGVVRRSTFYVLKAYNDHLKPWIGSTSVNGPTLRHAGAE
IATIEALTSSDGASRNLFIVNRDPHDAILCELYFDNHRLDGDRVVTVISGLTADSFNTVEAPDMVSPRAQPLVRQGGGYY
IPPHSLCVLEVPG
>Mature_493_residues
MEENLTGGFAQVRASKQQESRRWNPMILGHFVEHFHNQIYGGVFDPGSHLADDRGFRLDVIEALKELRPPIVRWPGGNFV
SDYHWYEAVGANRLPSYNKAWRVAEPNTFGTDEFIEWCRRLNCEPYICTNAGSGTPEEMSNWLEYCNGHLETRYANLRRK
SGYERPHAVKYWGIGNESYADFQIGAKTIGEWGPYVAEAAKMMRSVDDTIVLSAAAVPDTEWTLNLLKHAGRYLDLVSIH
GYWDDLEHHDEPSDYLTAVLRSHEPEKMIDGAREIIALAGLEGQIQIAFDEWNLRGWHHPRGTHEEKIRARDRNDRAETY
TMADALFTASFLNSCLRNSDIVSMANVSPSINARGPLYVHGGGVVRRSTFYVLKAYNDHLKPWIGSTSVNGPTLRHAGAE
IATIEALTSSDGASRNLFIVNRDPHDAILCELYFDNHRLDGDRVVTVISGLTADSFNTVEAPDMVSPRAQPLVRQGGGYY
IPPHSLCVLEVPG

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 55472; Mature: 55472

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEENLTGGFAQVRASKQQESRRWNPMILGHFVEHFHNQIYGGVFDPGSHLADDRGFRLDV
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHH
IEALKELRPPIVRWPGGNFVSDYHWYEAVGANRLPSYNKAWRVAEPNTFGTDEFIEWCRR
HHHHHHHCCCEEECCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHH
LNCEPYICTNAGSGTPEEMSNWLEYCNGHLETRYANLRRKSGYERPHAVKYWGIGNESYA
CCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
DFQIGAKTIGEWGPYVAEAAKMMRSVDDTIVLSAAAVPDTEWTLNLLKHAGRYLDLVSIH
EEEECHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEC
GYWDDLEHHDEPSDYLTAVLRSHEPEKMIDGAREIIALAGLEGQIQIAFDEWNLRGWHHP
CCHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
RGTHEEKIRARDRNDRAETYTMADALFTASFLNSCLRNSDIVSMANVSPSINARGPLYVH
CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEE
GGGVVRRSTFYVLKAYNDHLKPWIGSTSVNGPTLRHAGAEIATIEALTSSDGASRNLFIV
CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCEEEEE
NRDPHDAILCELYFDNHRLDGDRVVTVISGLTADSFNTVEAPDMVSPRAQPLVRQGGGYY
ECCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEE
IPPHSLCVLEVPG
ECCCCEEEEECCC
>Mature Secondary Structure
MEENLTGGFAQVRASKQQESRRWNPMILGHFVEHFHNQIYGGVFDPGSHLADDRGFRLDV
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHH
IEALKELRPPIVRWPGGNFVSDYHWYEAVGANRLPSYNKAWRVAEPNTFGTDEFIEWCRR
HHHHHHHCCCEEECCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHH
LNCEPYICTNAGSGTPEEMSNWLEYCNGHLETRYANLRRKSGYERPHAVKYWGIGNESYA
CCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
DFQIGAKTIGEWGPYVAEAAKMMRSVDDTIVLSAAAVPDTEWTLNLLKHAGRYLDLVSIH
EEEECHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEC
GYWDDLEHHDEPSDYLTAVLRSHEPEKMIDGAREIIALAGLEGQIQIAFDEWNLRGWHHP
CCHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
RGTHEEKIRARDRNDRAETYTMADALFTASFLNSCLRNSDIVSMANVSPSINARGPLYVH
CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEE
GGGVVRRSTFYVLKAYNDHLKPWIGSTSVNGPTLRHAGAEIATIEALTSSDGASRNLFIV
CCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCCCCEEEEE
NRDPHDAILCELYFDNHRLDGDRVVTVISGLTADSFNTVEAPDMVSPRAQPLVRQGGGYY
ECCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEE
IPPHSLCVLEVPG
ECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7887599 [H]