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The map label for this gene is 209552087

Identifier: 209552087

GI number: 209552087

Start: 176909

End: 178336

Strand: Reverse

Name: 209552087

Synonym: Rleg2_6235

Alternate gene names: NA

Gene position: 178336-176909 (Counterclockwise)

Preceding gene: 209552088

Following gene: 209552086

Centisome position: 57.76

GC content: 58.68

Gene sequence:

>1428_bases
ATGTCCTGTTTGATCACCATGTCGCAGAAAGAATTGCATCGCCTCGAAGTTGTTCAGAAGATCCGCGATCGACGCCTGAG
CGTCGTCCAGGCGACTGAGATGCTCGATCTCAGCCGAAGTCAGGTTCATAGGCTGCTGCAGGCTTATGATCGTTCCGGTG
AAGCCGGTCTTGTTTCGAAGAAGCGATCACGGCCGAGCAATCGGCGCCACAGCGAGGATTTTCGCAATGCGGCGCTGGAT
CTGATCCGCGAACGCTATCCGGATTTCGGTCCGACGCTGGCACGCGAGAAACTGATCGAACTGCATCAGATTTCGGTCGC
CAAGGAGACGTTACGCCAATGGATGACCGAGGCCGGCATCTGGATCTCGCGACGCGAACGCAAGAAGCGGGTTTTTCAGC
CGCGCGGCCGGCGGGATTGTCTCGGCGAGCTCGTCCAGATCGACGGTTCGCATCACTGGTGGTTTGAGAACCGCGGTCCC
AAATGCGCCCTGCTCGTCTACATCGATGACGCCACTGGCAAGCTCTTACATCTGCGCTTTGCCGCCTCTGAGAACACCTT
TGACTATCTACACGCGACGAAGGCTTATCTGCAGCAATGGGGCAAGCCGATTGCGTTTTACAGCGACAAGCACGGTGTTT
TCCGCAGCACGCATGCCTCGATGAAGGACCGCACGAGCGGTCTGACGCAGTTTGGCCGGGCGCTTTATGAGCTGAACATC
GACATCATCTGCGCCAACACCCCGCAGGCCAAAGGTCGCGTGGAACGCGCCAATCAGACGCTGCAGGATCGATTGGTCAA
GGAACTACGGCTGCGCGGCATCAACACGATCGAGGCGGCAAACCTCTATGCACCGGCGTTCATTGCGGATTTCAATGCTC
GTTTCGGCAAGCCGCCGCGCAATCCGAAGGACATGCATCGACCGCTGGCCGCACATGAGAACCTCGATGCCGCCATGTGC
CGGAAGGAGGTCCGCACGCTGTCGCAGTCCCTGACGCTACGCTACGACAAGGTGTTGTTCATCCTCGATCCGACGGAACA
GGCCAAGGCGCTGGCGGGTAAGAAGGTCGTCGTCTGCGACTATCCGGACGGTCGCCTCGAGATCATGCACGAGAGTTTTG
CCCTGCCCTACAGAACCTTCGATAAGTTGCGATCGATACATCGACCCGAAGTCGTCGACAACAAGCGTTTGGACGACATG
CTTTCGATCGTCGCTGAGCTGCAGGCTGGACGTGAACTGCAGCGCAGTAAGAGCGGCCCGCGCCGCACCGGTCAGACGGA
TCATATGTTTGGGATACCGGATGGTAGCCAGGGCAACGGTTATCAAAAGCGTGGTCACAAGCCCGGCCGGCGGACGGACT
TCATGAACGATCCGGAAGTCATCGCCAAACGGCAGAAGGCGCTGGCGCGGATGGAGGCTGCGGAATGA

Upstream 100 bases:

>100_bases
ATGCGACAGTCTCGCCTCTCGACGTGCTGGTCAATGCCAACGTTGGGAGCAAGGATGACGACTTTCAGCCTGGTCGAGAC
CATGAGCGGTCGGAGTCGTC

Downstream 100 bases:

>100_bases
ATGGTGTCGGCATAGTCTCAAAGCTAAAGCCGGAGGGTGCCTCTCACCCGCCCCCTCCCTACCCTTGCAACCCGGCCCAG
CCGGTTCGGTCGGGGGCTGA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MSCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSKKRSRPSNRRHSEDFRNAALD
LIRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGIWISRRERKKRVFQPRGRRDCLGELVQIDGSHHWWFENRGP
KCALLVYIDDATGKLLHLRFAASENTFDYLHATKAYLQQWGKPIAFYSDKHGVFRSTHASMKDRTSGLTQFGRALYELNI
DIICANTPQAKGRVERANQTLQDRLVKELRLRGINTIEAANLYAPAFIADFNARFGKPPRNPKDMHRPLAAHENLDAAMC
RKEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCDYPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDM
LSIVAELQAGRELQRSKSGPRRTGQTDHMFGIPDGSQGNGYQKRGHKPGRRTDFMNDPEVIAKRQKALARMEAAE

Sequences:

>Translated_475_residues
MSCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSKKRSRPSNRRHSEDFRNAALD
LIRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGIWISRRERKKRVFQPRGRRDCLGELVQIDGSHHWWFENRGP
KCALLVYIDDATGKLLHLRFAASENTFDYLHATKAYLQQWGKPIAFYSDKHGVFRSTHASMKDRTSGLTQFGRALYELNI
DIICANTPQAKGRVERANQTLQDRLVKELRLRGINTIEAANLYAPAFIADFNARFGKPPRNPKDMHRPLAAHENLDAAMC
RKEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCDYPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDM
LSIVAELQAGRELQRSKSGPRRTGQTDHMFGIPDGSQGNGYQKRGHKPGRRTDFMNDPEVIAKRQKALARMEAAE
>Mature_474_residues
SCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSKKRSRPSNRRHSEDFRNAALDL
IRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGIWISRRERKKRVFQPRGRRDCLGELVQIDGSHHWWFENRGPK
CALLVYIDDATGKLLHLRFAASENTFDYLHATKAYLQQWGKPIAFYSDKHGVFRSTHASMKDRTSGLTQFGRALYELNID
IICANTPQAKGRVERANQTLQDRLVKELRLRGINTIEAANLYAPAFIADFNARFGKPPRNPKDMHRPLAAHENLDAAMCR
KEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCDYPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDML
SIVAELQAGRELQRSKSGPRRTGQTDHMFGIPDGSQGNGYQKRGHKPGRRTDFMNDPEVIAKRQKALARMEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 54662; Mature: 54531

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSK
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHH
KRSRPSNRRHSEDFRNAALDLIRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGI
HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WISRRERKKRVFQPRGRRDCLGELVQIDGSHHWWFENRGPKCALLVYIDDATGKLLHLRF
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEE
AASENTFDYLHATKAYLQQWGKPIAFYSDKHGVFRSTHASMKDRTSGLTQFGRALYELNI
ECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCE
DIICANTPQAKGRVERANQTLQDRLVKELRLRGINTIEAANLYAPAFIADFNARFGKPPR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHCCCHHHCCCCCC
NPKDMHRPLAAHENLDAAMCRKEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCD
CHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHCCCEEEEEE
YPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDMLSIVAELQAGRELQRSKSGP
CCCCCCEEHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
RRTGQTDHMFGIPDGSQGNGYQKRGHKPGRRTDFMNDPEVIAKRQKALARMEAAE
CCCCCCCCEEECCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SCLITMSQKELHRLEVVQKIRDRRLSVVQATEMLDLSRSQVHRLLQAYDRSGEAGLVSK
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHH
KRSRPSNRRHSEDFRNAALDLIRERYPDFGPTLAREKLIELHQISVAKETLRQWMTEAGI
HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WISRRERKKRVFQPRGRRDCLGELVQIDGSHHWWFENRGPKCALLVYIDDATGKLLHLRF
CHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCEEEEEE
AASENTFDYLHATKAYLQQWGKPIAFYSDKHGVFRSTHASMKDRTSGLTQFGRALYELNI
ECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCE
DIICANTPQAKGRVERANQTLQDRLVKELRLRGINTIEAANLYAPAFIADFNARFGKPPR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHCCCHHHCCCCCC
NPKDMHRPLAAHENLDAAMCRKEVRTLSQSLTLRYDKVLFILDPTEQAKALAGKKVVVCD
CHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHHCCCEEEEEE
YPDGRLEIMHESFALPYRTFDKLRSIHRPEVVDNKRLDDMLSIVAELQAGRELQRSKSGP
CCCCCCEEHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
RRTGQTDHMFGIPDGSQGNGYQKRGHKPGRRTDFMNDPEVIAKRQKALARMEAAE
CCCCCCCCEEECCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]