| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is bphB [H]
Identifier: 209550610
GI number: 209550610
Start: 3092239
End: 3094809
Strand: Direct
Name: bphB [H]
Synonym: Rleg2_3034
Alternate gene names: 209550610
Gene position: 3092239-3094809 (Clockwise)
Preceding gene: 209550609
Following gene: 209550612
Centisome position: 68.14
GC content: 63.09
Gene sequence:
>2571_bases ATGAGCGGCAGCTTTGAACCCGTCGATTTGACCAATTGCGACCGCGAGCCGATCCATCAGCTTGGATCGGTTCAACCCTT CGGCTTTCTGCTGGCGATATCCTCGGACTGGATTGTCACACGCGCCTCGGCAAATCTGGCGGAGTTCCTCGCAATTACCC AGGCCGACGCGCTCGGTCGTCCTGTCACCTCGCTGATCACGCCAGAGTCGCTCCACACAATCCGCAACAAGCTGACCACG CTGCGCGGTTCCGACGTCGTCGAACGCATTTTCGGCATTGCCCTGACATCAGCTCAGGAGAGGTTCGATCTTGCCGTGCA CATGAGTGACAGCGGGGTCATCATCGAAGGCGAGCACTGTCAGGAAGACAGGCACGACGCCCCCTCCCTTTCCATGCGCA GCATGATGTCCCGTCTCGACCACACAGAGACGATGGAGGCTTTCTTTCGCGACGGGGCAAGACAGGCGCGCGCCCTGACC GGCTTCGATCGGGTCATGGTCTACCGCTTCGACGACAGCGGCTCCGGCGAAGTCGTGGCCGAAGCGGCCCGGGCCGGCAT CGGCTCGTTCCTCGGATTGCACTATCCGGCATCCGACATTCCGGTGCAGGCGCGGGCACTCTATCTGCGCAACCTGTTCC GCATCATTGCCGATGTCGACGCCGCTCCGGTCCCGATCCTCCCGCAACTCAACGAGAACGGACAGCCACTCGATCTCTCC ATGTCGGTGTTGCGTTCGGTCTCGCCGATCCACATCGAATATTTGAAGAACATGGGCGTCGGCGCCTCGCTCTCCATATC GATCGTCGTCGACGGCAAGCTCTGGGGCCTGTTTGCCTGCCATCATTACGGTCCGCGCCTACCCTCGGCGCAAAGCCGCT CCACCGCCGAACTGTTCGGCCAGATGTTTGCGTCACGCCTTGAAAGCCGCGAACGGCGGCTGGCGCTTGACTATGAGACT AAGGCGCGCCGGATCGCCGACCGGCTTCTCACCTCCGTCGCCGACAATGCCAGCCTGCTCGACGATCCGGCCTGGCTGAT CGAAGCGCTCGCCGACGCCATTCCTGCCGACGGCATCGGCGTTTGGATCAACGGCCGGCTGGCGCTTGCCGGCATCGGGC CGAATGAGAGAAGCTTCGCAACCCTTGTCCGCCATCTCAACCGCAATGCCGCCGGCCGCATCTATGCCGTCGACAGGCTC GCCGAGACCTATCCGGATCTCGAACTCGACGAAGCGGTGGCGGGCATGCTCGCCATCCCGATCTCGCGCTCGCCGCGCGA CTATGTCGTGCTTTTCCGCCAGGAGCTGGTGCGCACCGTCCGCTGGGGCGGCGACCCGCACAAGCCGGTTGAATACGGCC CCAATGGCCCGCGGCTGACGCCGCGCAAGAGTTTCGACGCCTGGTCGGAACTGGTGCGCGGCCGCTCCCTGCCCTTCACG GAGGCCGAGCGCCGTGTCGCCGAAACGATCCGCATCACGCTGATCGAAGTGGTATTGCGCCTCACCGACGAGGCCAGCAT GGCGCGCCAGGCCGCAAACGAGCGCCAGGAACTGCTAATCGCCGAACTGAACCATCGAGTCCGCAACATACTGAGCCTGA TTACCGGCATCATTCGGCAATCGCAGGCGACGTCGGTCAGCGTTGGCGACTACATCCGTCAGATCGAGGGCCGCGTTCAG TCGCTCGCCCGCGCGCATGACCAGATCACCCGCGATCATTGGGCGCCGGCGTCGCTGCGGCAATTGCTGATGGCCGAGAC GGCCGCCTATCTCGGCAAAAATGCCCAGCGTATTCAGATCGGCGGAGCAGACGTGCTGCTGGAGCCGCAGGCCTTCTCCA CCGCAGCCCTTGTTTTCCATGAGCTGATGACCAACAGCGCCAAATATGGCAGCCTTTCCGGCACCGGCAGCGGCACCGTC CAACTCGGTTGGCACCGCGATGACGAAGGCAATCTGCACATCGACTGGCGCGAAAAGGATGGTCCGCCGGTCGTCGAGCC CAAACGCCACGGCTTCGGTTCGACGATCATCCGCCGCTCGATTCCCTATGATCTCGGCGGCAAGGCTGACGTTCGCTACA ACAGAGATGGGGTCGAAGCAGATTTCTCCATTCCGGCCCGATATGTTGTCACAGCGACGAGCGAACGGTCAGATCCGGCT GCGGGTGGCACGGCCGATAATACGCCGATTGCCGGCGATCATCGGCCGCTCTCCGGCCTGACGGTGCTGCTGGTGGAAAA CAACCTGATCATCGCCATGGATGGGGAGGATATTCTGCGCCGCCTCGGCGCCGACGTGGCAACGGCGCCCAGTGTCGCCG AGGCGATGGAAATCCTGGCCGGCCAGTCCTTTGACCTGGCGCTTCTCGACGTCAATCTCGGCGATGAGACGAGTTTCGGA ATTGCCGACCGGCTGGCAGCCGAAGGCGTGCCCTTCGCTTTTGCCACAGGCTATGGGGAAGGCATTGCCCAGGCAAACAG CCACTCGGACGCGCCCGTGCTGCAGAAGCCCTATACGATGGACGGTGTGACGGACACCCTCGCTCGCCTGCCCGTTTTGA ACAAGCAATAA
Upstream 100 bases:
>100_bases ATGCCAGCGGTATAGACGATCCCGCAGCTGCCATCTCCGCAGCCCGCGATGTTTTCGGCCTGTTTTTGAAAGCCGGGCAA CTCGAACTGGAAGCCGTCCC
Downstream 100 bases:
>100_bases ACGTCAGCTCTCAGAGCGATCCGGGCGCAGCCCGCCGATGAAGAGCTGTTCCAGAAACCGCGCCGCATCCTCGAAGCGCC CCTCGCCGGAATGCTCCTGC
Product: PAS/PAC sensor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 855
Protein sequence:
>856_residues MSGSFEPVDLTNCDREPIHQLGSVQPFGFLLAISSDWIVTRASANLAEFLAITQADALGRPVTSLITPESLHTIRNKLTT LRGSDVVERIFGIALTSAQERFDLAVHMSDSGVIIEGEHCQEDRHDAPSLSMRSMMSRLDHTETMEAFFRDGARQARALT GFDRVMVYRFDDSGSGEVVAEAARAGIGSFLGLHYPASDIPVQARALYLRNLFRIIADVDAAPVPILPQLNENGQPLDLS MSVLRSVSPIHIEYLKNMGVGASLSISIVVDGKLWGLFACHHYGPRLPSAQSRSTAELFGQMFASRLESRERRLALDYET KARRIADRLLTSVADNASLLDDPAWLIEALADAIPADGIGVWINGRLALAGIGPNERSFATLVRHLNRNAAGRIYAVDRL AETYPDLELDEAVAGMLAIPISRSPRDYVVLFRQELVRTVRWGGDPHKPVEYGPNGPRLTPRKSFDAWSELVRGRSLPFT EAERRVAETIRITLIEVVLRLTDEASMARQAANERQELLIAELNHRVRNILSLITGIIRQSQATSVSVGDYIRQIEGRVQ SLARAHDQITRDHWAPASLRQLLMAETAAYLGKNAQRIQIGGADVLLEPQAFSTAALVFHELMTNSAKYGSLSGTGSGTV QLGWHRDDEGNLHIDWREKDGPPVVEPKRHGFGSTIIRRSIPYDLGGKADVRYNRDGVEADFSIPARYVVTATSERSDPA AGGTADNTPIAGDHRPLSGLTVLLVENNLIIAMDGEDILRRLGADVATAPSVAEAMEILAGQSFDLALLDVNLGDETSFG IADRLAAEGVPFAFATGYGEGIAQANSHSDAPVLQKPYTMDGVTDTLARLPVLNKQ
Sequences:
>Translated_856_residues MSGSFEPVDLTNCDREPIHQLGSVQPFGFLLAISSDWIVTRASANLAEFLAITQADALGRPVTSLITPESLHTIRNKLTT LRGSDVVERIFGIALTSAQERFDLAVHMSDSGVIIEGEHCQEDRHDAPSLSMRSMMSRLDHTETMEAFFRDGARQARALT GFDRVMVYRFDDSGSGEVVAEAARAGIGSFLGLHYPASDIPVQARALYLRNLFRIIADVDAAPVPILPQLNENGQPLDLS MSVLRSVSPIHIEYLKNMGVGASLSISIVVDGKLWGLFACHHYGPRLPSAQSRSTAELFGQMFASRLESRERRLALDYET KARRIADRLLTSVADNASLLDDPAWLIEALADAIPADGIGVWINGRLALAGIGPNERSFATLVRHLNRNAAGRIYAVDRL AETYPDLELDEAVAGMLAIPISRSPRDYVVLFRQELVRTVRWGGDPHKPVEYGPNGPRLTPRKSFDAWSELVRGRSLPFT EAERRVAETIRITLIEVVLRLTDEASMARQAANERQELLIAELNHRVRNILSLITGIIRQSQATSVSVGDYIRQIEGRVQ SLARAHDQITRDHWAPASLRQLLMAETAAYLGKNAQRIQIGGADVLLEPQAFSTAALVFHELMTNSAKYGSLSGTGSGTV QLGWHRDDEGNLHIDWREKDGPPVVEPKRHGFGSTIIRRSIPYDLGGKADVRYNRDGVEADFSIPARYVVTATSERSDPA AGGTADNTPIAGDHRPLSGLTVLLVENNLIIAMDGEDILRRLGADVATAPSVAEAMEILAGQSFDLALLDVNLGDETSFG IADRLAAEGVPFAFATGYGEGIAQANSHSDAPVLQKPYTMDGVTDTLARLPVLNKQ >Mature_855_residues SGSFEPVDLTNCDREPIHQLGSVQPFGFLLAISSDWIVTRASANLAEFLAITQADALGRPVTSLITPESLHTIRNKLTTL RGSDVVERIFGIALTSAQERFDLAVHMSDSGVIIEGEHCQEDRHDAPSLSMRSMMSRLDHTETMEAFFRDGARQARALTG FDRVMVYRFDDSGSGEVVAEAARAGIGSFLGLHYPASDIPVQARALYLRNLFRIIADVDAAPVPILPQLNENGQPLDLSM SVLRSVSPIHIEYLKNMGVGASLSISIVVDGKLWGLFACHHYGPRLPSAQSRSTAELFGQMFASRLESRERRLALDYETK ARRIADRLLTSVADNASLLDDPAWLIEALADAIPADGIGVWINGRLALAGIGPNERSFATLVRHLNRNAAGRIYAVDRLA ETYPDLELDEAVAGMLAIPISRSPRDYVVLFRQELVRTVRWGGDPHKPVEYGPNGPRLTPRKSFDAWSELVRGRSLPFTE AERRVAETIRITLIEVVLRLTDEASMARQAANERQELLIAELNHRVRNILSLITGIIRQSQATSVSVGDYIRQIEGRVQS LARAHDQITRDHWAPASLRQLLMAETAAYLGKNAQRIQIGGADVLLEPQAFSTAALVFHELMTNSAKYGSLSGTGSGTVQ LGWHRDDEGNLHIDWREKDGPPVVEPKRHGFGSTIIRRSIPYDLGGKADVRYNRDGVEADFSIPARYVVTATSERSDPAA GGTADNTPIAGDHRPLSGLTVLLVENNLIIAMDGEDILRRLGADVATAPSVAEAMEILAGQSFDLALLDVNLGDETSFGI ADRLAAEGVPFAFATGYGEGIAQANSHSDAPVLQKPYTMDGVTDTLARLPVLNKQ
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93440; Mature: 93309
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGSFEPVDLTNCDREPIHQLGSVQPFGFLLAISSDWIVTRASANLAEFLAITQADALGR CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHCCC PVTSLITPESLHTIRNKLTTLRGSDVVERIFGIALTSAQERFDLAVHMSDSGVIIEGEHC CHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHEEEEEEECCCCEEEECCCC QEDRHDAPSLSMRSMMSRLDHTETMEAFFRDGARQARALTGFDRVMVYRFDDSGSGEVVA CCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH EAARAGIGSFLGLHYPASDIPVQARALYLRNLFRIIADVDAAPVPILPQLNENGQPLDLS HHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH MSVLRSVSPIHIEYLKNMGVGASLSISIVVDGKLWGLFACHHYGPRLPSAQSRSTAELFG HHHHHCCCCHHHHHHHCCCCCCEEEEEEEECCCEEEHHHHHHCCCCCCCCCCCCHHHHHH QMFASRLESRERRLALDYETKARRIADRLLTSVADNASLLDDPAWLIEALADAIPADGIG HHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHCCCCCEE VWINGRLALAGIGPNERSFATLVRHLNRNAAGRIYAVDRLAETYPDLELDEAVAGMLAIP EEEECEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCHHHHHHHHEEEC ISRSPRDYVVLFRQELVRTVRWGGDPHKPVEYGPNGPRLTPRKSFDAWSELVRGRSLPFT CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCH EAERRVAETIRITLIEVVLRLTDEASMARQAANERQELLIAELNHRVRNILSLITGIIRQ HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SQATSVSVGDYIRQIEGRVQSLARAHDQITRDHWAPASLRQLLMAETAAYLGKNAQRIQI CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEE GGADVLLEPQAFSTAALVFHELMTNSAKYGSLSGTGSGTVQLGWHRDDEGNLHIDWREKD CCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCC GPPVVEPKRHGFGSTIIRRSIPYDLGGKADVRYNRDGVEADFSIPARYVVTATSERSDPA CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCC AGGTADNTPIAGDHRPLSGLTVLLVENNLIIAMDGEDILRRLGADVATAPSVAEAMEILA CCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHC GQSFDLALLDVNLGDETSFGIADRLAAEGVPFAFATGYGEGIAQANSHSDAPVLQKPYTM CCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCC DGVTDTLARLPVLNKQ CCHHHHHHHCCCCCCC >Mature Secondary Structure SGSFEPVDLTNCDREPIHQLGSVQPFGFLLAISSDWIVTRASANLAEFLAITQADALGR CCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHCCC PVTSLITPESLHTIRNKLTTLRGSDVVERIFGIALTSAQERFDLAVHMSDSGVIIEGEHC CHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHEEEEEEECCCCEEEECCCC QEDRHDAPSLSMRSMMSRLDHTETMEAFFRDGARQARALTGFDRVMVYRFDDSGSGEVVA CCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH EAARAGIGSFLGLHYPASDIPVQARALYLRNLFRIIADVDAAPVPILPQLNENGQPLDLS HHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH MSVLRSVSPIHIEYLKNMGVGASLSISIVVDGKLWGLFACHHYGPRLPSAQSRSTAELFG HHHHHCCCCHHHHHHHCCCCCCEEEEEEEECCCEEEHHHHHHCCCCCCCCCCCCHHHHHH QMFASRLESRERRLALDYETKARRIADRLLTSVADNASLLDDPAWLIEALADAIPADGIG HHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHCCCCCEE VWINGRLALAGIGPNERSFATLVRHLNRNAAGRIYAVDRLAETYPDLELDEAVAGMLAIP EEEECEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCHHHHHHHHEEEC ISRSPRDYVVLFRQELVRTVRWGGDPHKPVEYGPNGPRLTPRKSFDAWSELVRGRSLPFT CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCH EAERRVAETIRITLIEVVLRLTDEASMARQAANERQELLIAELNHRVRNILSLITGIIRQ HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SQATSVSVGDYIRQIEGRVQSLARAHDQITRDHWAPASLRQLLMAETAAYLGKNAQRIQI CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEE GGADVLLEPQAFSTAALVFHELMTNSAKYGSLSGTGSGTVQLGWHRDDEGNLHIDWREKD CCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCC GPPVVEPKRHGFGSTIIRRSIPYDLGGKADVRYNRDGVEADFSIPARYVVTATSERSDPA CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCC AGGTADNTPIAGDHRPLSGLTVLLVENNLIIAMDGEDILRRLGADVATAPSVAEAMEILA CCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHC GQSFDLALLDVNLGDETSFGIADRLAAEGVPFAFATGYGEGIAQANSHSDAPVLQKPYTM CCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCC DGVTDTLARLPVLNKQ CCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]