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The map label for this gene is ybiH [H]

Identifier: 209550575

GI number: 209550575

Start: 3063812

End: 3064519

Strand: Direct

Name: ybiH [H]

Synonym: Rleg2_2999

Alternate gene names: 209550575

Gene position: 3063812-3064519 (Clockwise)

Preceding gene: 209550573

Following gene: 209550576

Centisome position: 67.52

GC content: 64.27

Gene sequence:

>708_bases
ATGAACCAGGAACACGACAGCCAAACCCCGCCAGCATCCGCCCGCGCCGAGGCCGCGCGCCAGAAGATGTTGGCCGCCGC
CCTCGACGTCTTCGGCCGCTACGGTTTTGACGGCGCCTCGACACGGCAGCTGACCGAAGCCGCCGGCGTCAACCTGCAGG
CGATCCCCTATTATTTCGGCAGCAAGGAAGGCCTCTATATCGCCACCGCCGAATATCTGATGGCCCGCATCGATACGCAT
GTCGGCGACATGAGAGCGCGTATCGGCACGCGTCTCATGGCGCTCGACGCCGCCGGTGAAACACTCGGCGAAACGCAAGC
CCGCCTGTTCCTCACAGAAATTCTCCAGACGATGGTGACGCTTTTCGTCGGCAAGGAATCCGAATCCTGGGCCCGCTTCC
TGATCCGCGAGCAGATGGAGCCGACCGAAGCCTTCGCACGGGTTTATCAGGGCATCATGCGGCCGATGATCGAGATCGGC
CGGCGGCTGATCGGCGCCATCCTGCGGGAAGATCCCGCCTCGGAACACGTGCGCCTGCGCACCTTCAACCTTATCGGCAG
CATCCTTGTGTTTCGCGTCACCCACGCGGCCGTGCTTGCCCAGATGGAATGGGACGCCGTCGGCCCGAAACAGGTGGACA
CCTTGCGCGGCCTCGCCGCCGAACTGGTCGATATGCTCGGCCCGTCGACGAAGGGAGGCGCGGCATGA

Upstream 100 bases:

>100_bases
AAATTTGCCGAAGGCGGCTGATATCCCTCGATATATCGAACTTGATGGCAAAATATATCAATCGATTGACTTATTTAATA
AGCAGTGCTATAAAACTTTC

Downstream 100 bases:

>100_bases
AACGCCTCGTCCCCCTCACCTTCCTTCTCCTCGTTGCGGCAGGCGCCGCCGCCTGGTGGTACGGCCTGCCTGAAAAGCTC
GGCTGGTTGCCCGAGGCCCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNQEHDSQTPPASARAEAARQKMLAAALDVFGRYGFDGASTRQLTEAAGVNLQAIPYYFGSKEGLYIATAEYLMARIDTH
VGDMRARIGTRLMALDAAGETLGETQARLFLTEILQTMVTLFVGKESESWARFLIREQMEPTEAFARVYQGIMRPMIEIG
RRLIGAILREDPASEHVRLRTFNLIGSILVFRVTHAAVLAQMEWDAVGPKQVDTLRGLAAELVDMLGPSTKGGAA

Sequences:

>Translated_235_residues
MNQEHDSQTPPASARAEAARQKMLAAALDVFGRYGFDGASTRQLTEAAGVNLQAIPYYFGSKEGLYIATAEYLMARIDTH
VGDMRARIGTRLMALDAAGETLGETQARLFLTEILQTMVTLFVGKESESWARFLIREQMEPTEAFARVYQGIMRPMIEIG
RRLIGAILREDPASEHVRLRTFNLIGSILVFRVTHAAVLAQMEWDAVGPKQVDTLRGLAAELVDMLGPSTKGGAA
>Mature_235_residues
MNQEHDSQTPPASARAEAARQKMLAAALDVFGRYGFDGASTRQLTEAAGVNLQAIPYYFGSKEGLYIATAEYLMARIDTH
VGDMRARIGTRLMALDAAGETLGETQARLFLTEILQTMVTLFVGKESESWARFLIREQMEPTEAFARVYQGIMRPMIEIG
RRLIGAILREDPASEHVRLRTFNLIGSILVFRVTHAAVLAQMEWDAVGPKQVDTLRGLAAELVDMLGPSTKGGAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=222, Percent_Identity=29.7297297297297, Blast_Score=101, Evalue=4e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25818; Mature: 25818

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQEHDSQTPPASARAEAARQKMLAAALDVFGRYGFDGASTRQLTEAAGVNLQAIPYYFG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEECCEEC
SKEGLYIATAEYLMARIDTHVGDMRARIGTRLMALDAAGETLGETQARLFLTEILQTMVT
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LFVGKESESWARFLIREQMEPTEAFARVYQGIMRPMIEIGRRLIGAILREDPASEHVRLR
HHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TFNLIGSILVFRVTHAAVLAQMEWDAVGPKQVDTLRGLAAELVDMLGPSTKGGAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNQEHDSQTPPASARAEAARQKMLAAALDVFGRYGFDGASTRQLTEAAGVNLQAIPYYFG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEECCEEC
SKEGLYIATAEYLMARIDTHVGDMRARIGTRLMALDAAGETLGETQARLFLTEILQTMVT
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LFVGKESESWARFLIREQMEPTEAFARVYQGIMRPMIEIGRRLIGAILREDPASEHVRLR
HHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TFNLIGSILVFRVTHAAVLAQMEWDAVGPKQVDTLRGLAAELVDMLGPSTKGGAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]