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The map label for this gene is xynZ [H]

Identifier: 209550538

GI number: 209550538

Start: 3022235

End: 3023308

Strand: Direct

Name: xynZ [H]

Synonym: Rleg2_2962

Alternate gene names: 209550538

Gene position: 3022235-3023308 (Clockwise)

Preceding gene: 209550537

Following gene: 209550539

Centisome position: 66.6

GC content: 56.7

Gene sequence:

>1074_bases
ATGAATAGAAGACGTTTCCTCGCCTCGATTCCGCTTGCTCTGTTGTATGCCAATGCGGGCGACGTCCTCGCACAGGTGCC
TCCGGCGAGAGGGTTGCGCGCCGTTGCCGACAGCAAGGCATTCCGATTCGGATCGGCAATCGACCTGCAGAACATCAACG
ACCCAATCGCCTCCAGGATCTACACCGACAACGTCAATTCGATAACGCCGCGAAACGAGCTGAAATGGAATGCGACAGAA
AAGAGACCGGGTGTATTCAGCTTCAAGAATGCCGACCTTATGGTTGCATTCGCACGCAAAAACAACATGAGGGTTTATGG
CCATACTTTGATCTGGTATCGCGTCCCGGAGTGGGTGTCTGAGATCACCGACGCCAAGACGATTCAGGCGACGATGAACC
GTCATATAAAACAGGTTGTCACTCGCTATAAGAACTCGATCGACGCTTGGGATGTGGTGAACGAGCCGTTGGAATATGAT
GCGCCGGATCTGCGGGATTGTGTTTTCCGACGCCTCCTTGGCGACGACTATATCCGTATGAGCTTCGACATGGCACATCA
GGCCAATCCCGGTGCGACGCTGGTGCTCAACGAAACGCATCTGGAGAAAAAATCCGACGTGTTCGAACAGAAGCGCGCCC
GCATACTGAAAATCGTCGAGGACCTCGTCGCCCGGAAAACGCCGATCGGCGCGGTTGGGCTGCAGGCGCATTTCCGTCCC
GGCCTCGACCGAATCGATCCGGAAGGAATGGGGCGCTTTTGCGCGGCGCTGAAGGACATGGGGGTCGGCGTTTTCATCAC
CGAACTCGATGCGTCCTGCCACTTCCTCAACCGCGACAAAGGCTTCACGCCGGCGTCATACGGCGATATTTTCAGTGACG
TGATCACCGTGGCGGCCGAGCGTGGCGACTTGAAAGGCGTGACGGTATGGGGCATGTCGGAAAAATACGCCGAGCCCGAC
GAGAAGGCGGCCGGTCCCGACGCGGCTTGCACGAAGCGCGTTAATCTTTACGACGAAAACAACACGCCGAGAAGTGCGGT
TGATGGCATCCGACGGGCAATAGAGGCGATGTGA

Upstream 100 bases:

>100_bases
TACTGAATTGAAACACAGACCCCGAGATGGATCGTTGCCGGCGAGCTCGGCCCGTTAAATTCCGCCGCGGACATGAAAAA
AGCCAACAGTGAGAGATAGA

Downstream 100 bases:

>100_bases
TGCGTAAGAAAACAACGGAGACGTCGACAGATTCATGAGAAAAGCCGTTATTTACGTGGAAAAATTTCTGCCTGCCAGCC
AGGCATTTGTTCTCAATCAG

Product: glycoside hydrolase family 10

Products: NA

Alternate protein names: Xylanase Z; 1,4-beta-D-xylan xylanohydrolase Z [H]

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MNRRRFLASIPLALLYANAGDVLAQVPPARGLRAVADSKAFRFGSAIDLQNINDPIASRIYTDNVNSITPRNELKWNATE
KRPGVFSFKNADLMVAFARKNNMRVYGHTLIWYRVPEWVSEITDAKTIQATMNRHIKQVVTRYKNSIDAWDVVNEPLEYD
APDLRDCVFRRLLGDDYIRMSFDMAHQANPGATLVLNETHLEKKSDVFEQKRARILKIVEDLVARKTPIGAVGLQAHFRP
GLDRIDPEGMGRFCAALKDMGVGVFITELDASCHFLNRDKGFTPASYGDIFSDVITVAAERGDLKGVTVWGMSEKYAEPD
EKAAGPDAACTKRVNLYDENNTPRSAVDGIRRAIEAM

Sequences:

>Translated_357_residues
MNRRRFLASIPLALLYANAGDVLAQVPPARGLRAVADSKAFRFGSAIDLQNINDPIASRIYTDNVNSITPRNELKWNATE
KRPGVFSFKNADLMVAFARKNNMRVYGHTLIWYRVPEWVSEITDAKTIQATMNRHIKQVVTRYKNSIDAWDVVNEPLEYD
APDLRDCVFRRLLGDDYIRMSFDMAHQANPGATLVLNETHLEKKSDVFEQKRARILKIVEDLVARKTPIGAVGLQAHFRP
GLDRIDPEGMGRFCAALKDMGVGVFITELDASCHFLNRDKGFTPASYGDIFSDVITVAAERGDLKGVTVWGMSEKYAEPD
EKAAGPDAACTKRVNLYDENNTPRSAVDGIRRAIEAM
>Mature_357_residues
MNRRRFLASIPLALLYANAGDVLAQVPPARGLRAVADSKAFRFGSAIDLQNINDPIASRIYTDNVNSITPRNELKWNATE
KRPGVFSFKNADLMVAFARKNNMRVYGHTLIWYRVPEWVSEITDAKTIQATMNRHIKQVVTRYKNSIDAWDVVNEPLEYD
APDLRDCVFRRLLGDDYIRMSFDMAHQANPGATLVLNETHLEKKSDVFEQKRARILKIVEDLVARKTPIGAVGLQAHFRP
GLDRIDPEGMGRFCAALKDMGVGVFITELDASCHFLNRDKGFTPASYGDIFSDVITVAAERGDLKGVTVWGMSEKYAEPD
EKAAGPDAACTKRVNLYDENNTPRSAVDGIRRAIEAM

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR016134
- InterPro:   IPR002105
- InterPro:   IPR006584
- InterPro:   IPR018242
- InterPro:   IPR018247
- InterPro:   IPR000801
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF03422 CBM_6; PF00404 Dockerin_1; PF00756 Esterase; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 40010; Mature: 40010

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRRFLASIPLALLYANAGDVLAQVPPARGLRAVADSKAFRFGSAIDLQNINDPIASRI
CCCCHHHHHCCEEHEECCCCHHHHCCCCCCCHHHHHHCHHHHCCCEEECCCCCCHHHHHE
YTDNVNSITPRNELKWNATEKRPGVFSFKNADLMVAFARKNNMRVYGHTLIWYRVPEWVS
ECCCCCCCCCCCCCEECCCCCCCCEEEECCCCEEEEEECCCCEEEEEEEEEEEECHHHHH
EITDAKTIQATMNRHIKQVVTRYKNSIDAWDVVNEPLEYDAPDLRDCVFRRLLGDDYIRM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEE
SFDMAHQANPGATLVLNETHLEKKSDVFEQKRARILKIVEDLVARKTPIGAVGLQAHFRP
EEHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHCCC
GLDRIDPEGMGRFCAALKDMGVGVFITELDASCHFLNRDKGFTPASYGDIFSDVITVAAE
CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
RGDLKGVTVWGMSEKYAEPDEKAAGPDAACTKRVNLYDENNTPRSAVDGIRRAIEAM
CCCCCEEEEECCCHHHCCCCHHCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRRRFLASIPLALLYANAGDVLAQVPPARGLRAVADSKAFRFGSAIDLQNINDPIASRI
CCCCHHHHHCCEEHEECCCCHHHHCCCCCCCHHHHHHCHHHHCCCEEECCCCCCHHHHHE
YTDNVNSITPRNELKWNATEKRPGVFSFKNADLMVAFARKNNMRVYGHTLIWYRVPEWVS
ECCCCCCCCCCCCCEECCCCCCCCEEEECCCCEEEEEECCCCEEEEEEEEEEEECHHHHH
EITDAKTIQATMNRHIKQVVTRYKNSIDAWDVVNEPLEYDAPDLRDCVFRRLLGDDYIRM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEE
SFDMAHQANPGATLVLNETHLEKKSDVFEQKRARILKIVEDLVARKTPIGAVGLQAHFRP
EEHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHCCC
GLDRIDPEGMGRFCAALKDMGVGVFITELDASCHFLNRDKGFTPASYGDIFSDVITVAAE
CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
RGDLKGVTVWGMSEKYAEPDEKAAGPDAACTKRVNLYDENNTPRSAVDGIRRAIEAM
CCCCCEEEEECCCHHHCCCCHHCCCCCHHHHCEEEEEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3139632; 7664125 [H]