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The map label for this gene is xylH [H]

Identifier: 209550503

GI number: 209550503

Start: 2984197

End: 2985510

Strand: Direct

Name: xylH [H]

Synonym: Rleg2_2926

Alternate gene names: 209550503

Gene position: 2984197-2985510 (Clockwise)

Preceding gene: 209550502

Following gene: 209550504

Centisome position: 65.76

GC content: 64.69

Gene sequence:

>1314_bases
ATGGCCGAAATGGTAAAATCAACAGCATCAAGCGGGCCGCGAACGGCGGAAGCCAATCCGGTGACCCGCTTCTTCCGCGC
GACCGAGATCGACACGCGTCTGCTCGGCATGATCGGCGCGCTCATCATCATCTGGATCGGTTTCCACATCATCACCGGCG
GCCTGTTTCTGACCCCGCGCAATCTCTGGAACCTCTCGGTCCAGACGACCGATATCGCGATCATGACGACAGGCATGGTG
CTGATCATCGTCACCCGCAACATCGACCTTTCGGTGGGATCCGTGCTCGGCCTCTGCGGCATGATCATGGGGGTGACCCA
GGCGAAGATCCTGCCTGAGTATATCGGCTTCGACAGCCCCTTCACCTGGGCGATCACGCTGCTGGTCGGCATTGCGGCCG
GCTTCCTGATCGGCGCCTTCCAGGGCATGATCATCGCCTTCCTCAACGTTCCCTCCTTCATCGTCACCCTCGGCGGCTTG
CTGGTATGGCGCGGCGCGACCTGGCTCGTCACCAGCGGCCAGACGGTTGCCCCCATGGACCAGACCTTCCGCATCATGGG
CGGCGGCGCGGAGGGCTCGATCGGCGCCACCTGGAGCTGGATCGTCGGCATTGCCGCCTGCCTGTTCGTTATCGCCAGCA
TCATCGGCTCGCGCCGGCAGCGCCGCCGCTTCGGCTTTCCGCGCCGGCCGATCTGGGCGGAATATTTCCTCGCGATCCTC
AGCTGCGTGCTGATCCTCGGCGCGGTCTCCATCGCCAACAGCTATTACTGGCCGATCAACATCGCCAAGAAATATGCCGA
GACCAACAATATCCCCTGGCCCGAGACCGGCCTGGATATTCCCTACGGCATCGCCGTGCCGGTGCTGATCGCCATCGTCG
TCGGCATCATCATGACCTTCATCGCCACCCGGCTGCGCTTCGGCCGCTATGTCTTCGCAATCGGCGGCAACCCCGAGGCG
GCCGAGCTGGCCGGCATCAAGACCCGCTGGGTGACGGTGCGCATCTTCGCGCTGATGGGCGTTCTTGCGGCCATTGCGGC
GGCGATTTCCACTGCCCGGCTCAACGCCGCGACCAACTCGCAGGGCACGCTCGACGAGCTTTACACCATCGCCGCCGCCG
TCATCGGCGGGACGTCGCTGGCGGGCGGCACCGGCACCATTGCCGGCGCCATGCTCGGCGCGCTCGTCATGCAATCGCTG
CAATCGGGCATGGTTCTCGCCCATGTCGACACGCCGCTGCAGAGCGTCGTCGTCGGCACTGTCCTCGTCGTGGCGGTCTG
GCTCGACACCGTCTATCGCGCCCGTGCCAAGTGA

Upstream 100 bases:

>100_bases
AGCATCGCGATGGTCAGTTGAAGAACAGACGAATGACGCCGCCCAGAATTTCGGGCACGCCGGCGCAGCCGTCCAAACAT
AATGGGGGAACGGCAAACCC

Downstream 100 bases:

>100_bases
GAGGAGCCCCAGACATGGCTGATCAACGCACTCCCCTTGTGGAACTGAAAAACATCTCGATCTCCTTCGGCGGCATCCAT
GCCGTGGACAATGCCTCGGT

Product: inner-membrane translocator

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MAEMVKSTASSGPRTAEANPVTRFFRATEIDTRLLGMIGALIIIWIGFHIITGGLFLTPRNLWNLSVQTTDIAIMTTGMV
LIIVTRNIDLSVGSVLGLCGMIMGVTQAKILPEYIGFDSPFTWAITLLVGIAAGFLIGAFQGMIIAFLNVPSFIVTLGGL
LVWRGATWLVTSGQTVAPMDQTFRIMGGGAEGSIGATWSWIVGIAACLFVIASIIGSRRQRRRFGFPRRPIWAEYFLAIL
SCVLILGAVSIANSYYWPINIAKKYAETNNIPWPETGLDIPYGIAVPVLIAIVVGIIMTFIATRLRFGRYVFAIGGNPEA
AELAGIKTRWVTVRIFALMGVLAAIAAAISTARLNAATNSQGTLDELYTIAAAVIGGTSLAGGTGTIAGAMLGALVMQSL
QSGMVLAHVDTPLQSVVVGTVLVVAVWLDTVYRARAK

Sequences:

>Translated_437_residues
MAEMVKSTASSGPRTAEANPVTRFFRATEIDTRLLGMIGALIIIWIGFHIITGGLFLTPRNLWNLSVQTTDIAIMTTGMV
LIIVTRNIDLSVGSVLGLCGMIMGVTQAKILPEYIGFDSPFTWAITLLVGIAAGFLIGAFQGMIIAFLNVPSFIVTLGGL
LVWRGATWLVTSGQTVAPMDQTFRIMGGGAEGSIGATWSWIVGIAACLFVIASIIGSRRQRRRFGFPRRPIWAEYFLAIL
SCVLILGAVSIANSYYWPINIAKKYAETNNIPWPETGLDIPYGIAVPVLIAIVVGIIMTFIATRLRFGRYVFAIGGNPEA
AELAGIKTRWVTVRIFALMGVLAAIAAAISTARLNAATNSQGTLDELYTIAAAVIGGTSLAGGTGTIAGAMLGALVMQSL
QSGMVLAHVDTPLQSVVVGTVLVVAVWLDTVYRARAK
>Mature_436_residues
AEMVKSTASSGPRTAEANPVTRFFRATEIDTRLLGMIGALIIIWIGFHIITGGLFLTPRNLWNLSVQTTDIAIMTTGMVL
IIVTRNIDLSVGSVLGLCGMIMGVTQAKILPEYIGFDSPFTWAITLLVGIAAGFLIGAFQGMIIAFLNVPSFIVTLGGLL
VWRGATWLVTSGQTVAPMDQTFRIMGGGAEGSIGATWSWIVGIAACLFVIASIIGSRRQRRRFGFPRRPIWAEYFLAILS
CVLILGAVSIANSYYWPINIAKKYAETNNIPWPETGLDIPYGIAVPVLIAIVVGIIMTFIATRLRFGRYVFAIGGNPEAA
ELAGIKTRWVTVRIFALMGVLAAIAAAISTARLNAATNSQGTLDELYTIAAAVIGGTSLAGGTGTIAGAMLGALVMQSLQ
SGMVLAHVDTPLQSVVVGTVLVVAVWLDTVYRARAK

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=408, Percent_Identity=35.2941176470588, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1790524, Length=147, Percent_Identity=40.8163265306122, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790191, Length=197, Percent_Identity=35.5329949238579, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788896, Length=177, Percent_Identity=37.8531073446328, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI145693152, Length=156, Percent_Identity=35.2564102564103, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082395, Length=145, Percent_Identity=37.2413793103448, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788471, Length=135, Percent_Identity=37.7777777777778, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787794, Length=160, Percent_Identity=28.125, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 46488; Mature: 46357

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEMVKSTASSGPRTAEANPVTRFFRATEIDTRLLGMIGALIIIWIGFHIITGGLFLTPR
CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
NLWNLSVQTTDIAIMTTGMVLIIVTRNIDLSVGSVLGLCGMIMGVTQAKILPEYIGFDSP
CCEEEEEEECEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FTWAITLLVGIAAGFLIGAFQGMIIAFLNVPSFIVTLGGLLVWRGATWLVTSGQTVAPMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCC
QTFRIMGGGAEGSIGATWSWIVGIAACLFVIASIIGSRRQRRRFGFPRRPIWAEYFLAIL
HHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SCVLILGAVSIANSYYWPINIAKKYAETNNIPWPETGLDIPYGIAVPVLIAIVVGIIMTF
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IATRLRFGRYVFAIGGNPEAAELAGIKTRWVTVRIFALMGVLAAIAAAISTARLNAATNS
HHHHHHHCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QGTLDELYTIAAAVIGGTSLAGGTGTIAGAMLGALVMQSLQSGMVLAHVDTPLQSVVVGT
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHH
VLVVAVWLDTVYRARAK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEMVKSTASSGPRTAEANPVTRFFRATEIDTRLLGMIGALIIIWIGFHIITGGLFLTPR
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
NLWNLSVQTTDIAIMTTGMVLIIVTRNIDLSVGSVLGLCGMIMGVTQAKILPEYIGFDSP
CCEEEEEEECEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FTWAITLLVGIAAGFLIGAFQGMIIAFLNVPSFIVTLGGLLVWRGATWLVTSGQTVAPMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCC
QTFRIMGGGAEGSIGATWSWIVGIAACLFVIASIIGSRRQRRRFGFPRRPIWAEYFLAIL
HHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SCVLILGAVSIANSYYWPINIAKKYAETNNIPWPETGLDIPYGIAVPVLIAIVVGIIMTF
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IATRLRFGRYVFAIGGNPEAAELAGIKTRWVTVRIFALMGVLAAIAAAISTARLNAATNS
HHHHHHHCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QGTLDELYTIAAAVIGGTSLAGGTGTIAGAMLGALVMQSLQSGMVLAHVDTPLQSVVVGT
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHH
VLVVAVWLDTVYRARAK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]