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The map label for this gene is ykgD [C]

Identifier: 209550474

GI number: 209550474

Start: 2949312

End: 2950301

Strand: Direct

Name: ykgD [C]

Synonym: Rleg2_2897

Alternate gene names: 209550474

Gene position: 2949312-2950301 (Clockwise)

Preceding gene: 209550473

Following gene: 209550475

Centisome position: 64.99

GC content: 60.0

Gene sequence:

>990_bases
ATGCTTGACCATCCGTCCCGGCCGTTGTCGCCGTCAACTATCCCAATGGATGCCCTGAGCGAAGTCCTGCAAGACTTTCG
CTTGAGCGGGGTCAACTATGGCCGCTGCGAGCTCAGGCATCCATGGAGCATCGCCTTTCCGCAACAACAGCTGCTTCGTT
TCCACTTCGTCAGCCAAGGTCCGTGCTGGATCCATACCGAAGTCGAAGGATGGCAGGAGTTGAATGATGGCGATCTGGTT
CTGCTGCCTCAAGGCATCGCACATCGGTTGGCCAGCGCGCCGGATGTTGAAGGAGATTCACTTAAAGGCTGTCAGATAAC
AAGAGTGGGAAGCAATGTCTGCGATGTCGTGCGGGAGGGAATGGGGGCGAATAGCACCCTCTTCTGCGGCTCCATGGCTT
TGGGCGCGCATGCGCTTCACCCCTTGATCGCTCTGATGCCGCCAATCATCAAGGGCTGCGATGTGGCCGGCAATGACCCG
ATCGTTGGCCCCCTTCTGGCCGCCATGTCGGCGGAAGCGACACAGCCCCAAATGGGAAGCGCGACCGTGCTATCGCGAAT
GGCGGACTTGCTCGCGGCGCGGCTTATCCGCTGCTGGGTCAATTGCAGCGGAGCTTCGACCACCGGCTGGCTCGCCGCCA
TCCGGGATCCTCATATCGGTCGTGTATTGGCGGCCATGCACCGGGACCCCGGCCATAACTGGACCCTCGAAAGCCTCGCT
GGTGTGGCTGGCCAGTCGCGCTCGATCTTCGCCGAGCGTTTCAGCGCTATCTTGGGTGAAGGCGCGGCACATTACCTCGT
CCGTCTGCGTATGCAGCTTGCCCGCGATTTGTTGGGTCAAAGCGGCATGTCGATCGCGGAAGTTGCTTCCCGGCTGGGCT
ATGAGTCCGAGGCGTCTTTCGCGCGCGCCTTCAAACGCGTCACCAACGTCTCACCGGGGATTGTGCGCCGCACAAGTTCC
GGACGAATGGATATAGATTTCGGATTTTAA

Upstream 100 bases:

>100_bases
AATCACAACGGCGGTCCTGGGCCCCAGCCGGTCCTTCGCCCGCACATCGAGGCAGGCACATCCGCTTGAATGCCGGACGC
TTGAGACCTAAATTGGCTAA

Downstream 100 bases:

>100_bases
GACACATATCATCCTGAAAACTTCGTCTATCAAATCTCCGAACATAGGAGATATTTCAATGACGGACTCAACATCACAGT
TCGACGGTGTCGCAATTGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLDHPSRPLSPSTIPMDALSEVLQDFRLSGVNYGRCELRHPWSIAFPQQQLLRFHFVSQGPCWIHTEVEGWQELNDGDLV
LLPQGIAHRLASAPDVEGDSLKGCQITRVGSNVCDVVREGMGANSTLFCGSMALGAHALHPLIALMPPIIKGCDVAGNDP
IVGPLLAAMSAEATQPQMGSATVLSRMADLLAARLIRCWVNCSGASTTGWLAAIRDPHIGRVLAAMHRDPGHNWTLESLA
GVAGQSRSIFAERFSAILGEGAAHYLVRLRMQLARDLLGQSGMSIAEVASRLGYESEASFARAFKRVTNVSPGIVRRTSS
GRMDIDFGF

Sequences:

>Translated_329_residues
MLDHPSRPLSPSTIPMDALSEVLQDFRLSGVNYGRCELRHPWSIAFPQQQLLRFHFVSQGPCWIHTEVEGWQELNDGDLV
LLPQGIAHRLASAPDVEGDSLKGCQITRVGSNVCDVVREGMGANSTLFCGSMALGAHALHPLIALMPPIIKGCDVAGNDP
IVGPLLAAMSAEATQPQMGSATVLSRMADLLAARLIRCWVNCSGASTTGWLAAIRDPHIGRVLAAMHRDPGHNWTLESLA
GVAGQSRSIFAERFSAILGEGAAHYLVRLRMQLARDLLGQSGMSIAEVASRLGYESEASFARAFKRVTNVSPGIVRRTSS
GRMDIDFGF
>Mature_329_residues
MLDHPSRPLSPSTIPMDALSEVLQDFRLSGVNYGRCELRHPWSIAFPQQQLLRFHFVSQGPCWIHTEVEGWQELNDGDLV
LLPQGIAHRLASAPDVEGDSLKGCQITRVGSNVCDVVREGMGANSTLFCGSMALGAHALHPLIALMPPIIKGCDVAGNDP
IVGPLLAAMSAEATQPQMGSATVLSRMADLLAARLIRCWVNCSGASTTGWLAAIRDPHIGRVLAAMHRDPGHNWTLESLA
GVAGQSRSIFAERFSAILGEGAAHYLVRLRMQLARDLLGQSGMSIAEVASRLGYESEASFARAFKRVTNVSPGIVRRTSS
GRMDIDFGF

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=304, Percent_Identity=26.9736842105263, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082197, Length=132, Percent_Identity=32.5757575757576, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35461; Mature: 35461

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDHPSRPLSPSTIPMDALSEVLQDFRLSGVNYGRCELRHPWSIAFPQQQLLRFHFVSQG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCC
PCWIHTEVEGWQELNDGDLVLLPQGIAHRLASAPDVEGDSLKGCQITRVGSNVCDVVREG
CEEEEEECCHHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHC
MGANSTLFCGSMALGAHALHPLIALMPPIIKGCDVAGNDPIVGPLLAAMSAEATQPQMGS
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCH
ATVLSRMADLLAARLIRCWVNCSGASTTGWLAAIRDPHIGRVLAAMHRDPGHNWTLESLA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHH
GVAGQSRSIFAERFSAILGEGAAHYLVRLRMQLARDLLGQSGMSIAEVASRLGYESEASF
HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHH
ARAFKRVTNVSPGIVRRTSSGRMDIDFGF
HHHHHHHHCCCCCCEEECCCCCEEEECCC
>Mature Secondary Structure
MLDHPSRPLSPSTIPMDALSEVLQDFRLSGVNYGRCELRHPWSIAFPQQQLLRFHFVSQG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCC
PCWIHTEVEGWQELNDGDLVLLPQGIAHRLASAPDVEGDSLKGCQITRVGSNVCDVVREG
CEEEEEECCHHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHC
MGANSTLFCGSMALGAHALHPLIALMPPIIKGCDVAGNDPIVGPLLAAMSAEATQPQMGS
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCH
ATVLSRMADLLAARLIRCWVNCSGASTTGWLAAIRDPHIGRVLAAMHRDPGHNWTLESLA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHH
GVAGQSRSIFAERFSAILGEGAAHYLVRLRMQLARDLLGQSGMSIAEVASRLGYESEASF
HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHH
ARAFKRVTNVSPGIVRRTSSGRMDIDFGF
HHHHHHHHCCCCCCEEECCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]