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The map label for this gene is rhiR [H]

Identifier: 209550397

GI number: 209550397

Start: 2866871

End: 2867596

Strand: Direct

Name: rhiR [H]

Synonym: Rleg2_2818

Alternate gene names: 209550397

Gene position: 2866871-2867596 (Clockwise)

Preceding gene: 209550395

Following gene: 209550398

Centisome position: 63.18

GC content: 58.4

Gene sequence:

>726_bases
ATGTCTTATATGACTACCTCTGAAAGACAGTCATCGCTTTCTGTAGAGCTTGCCACTGCACGAACGCGCAGCCTGTTTGC
GCAGGCGCTCGGCAGGGTCTCTGCCGCCTTCGGACTGTCGCATGCGACCCTGATGCATGCCCCCTCCCCGGAAGACCTTC
TGTTGAAACCCCTGCTGATCGAAAGCTCGCTGCCGGCCGCCTATATCAAGGAGTTCGACCGCGCCCACATGATGCGTGGT
TGTCCTTTCGGCTTACGGCTGAGGGAATCCGCCGTCCCCCCGGCCTGGCATCTGAACGACGCCGCCAATGGTCAGGCCTT
TCCCGCCGAACTGCGCGCCCTGATGCTGCGCCATGCCATACCGGCGGGTGTTGCCATGCCGACTATTGCTGCGAATGGCC
AGCGCCTGGTCTTCTGGTTCTGTGGCGAGCGCGCCGCACTCGGCCAGAGCGAGGTCAACGAGCTGGCTATGATCATTCTG
CATGCACTCGATGCATATAATGCAGTCAAGCGGAATGAGGAATGCGCGCATAACGCGCTATCGACCAGAGAACTGGAAGT
TGTGCGCTGGACGGCCCAGGGCAAGACCTCGATCGAAATCGGCCAGATCCTGGCGCTCTCGGATCATACGGTGAACGCCT
ACATGACCAACGCGATCAAAAAACTCGATTGTGTCAACCGTACCCAGTTGGTAGCTAAGGCAATTCGATTGAAGCTGATC
AACTGA

Upstream 100 bases:

>100_bases
AATTCGAGTAAATCAGCTTGCGCTAAGTCAATTGGGACTAGCATCTGACCGGCTTTCTGTGTTTGATAGCGTTAACATTG
GGGCAGCCGGGGGCGTACAG

Downstream 100 bases:

>100_bases
GGAATCGGAAGAGAGTCGGCCCGTCGTCCCGTGATCTGGGGGAATCGTGTCTCTTCGCTTCGAACAGCCCGTCATCGACA
AGACTGAGCAATCCCGCGCC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSYMTTSERQSSLSVELATARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAYIKEFDRAHMMRG
CPFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAIPAGVAMPTIAANGQRLVFWFCGERAALGQSEVNELAMIIL
HALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI
N

Sequences:

>Translated_241_residues
MSYMTTSERQSSLSVELATARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAYIKEFDRAHMMRG
CPFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAIPAGVAMPTIAANGQRLVFWFCGERAALGQSEVNELAMIIL
HALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI
N
>Mature_240_residues
SYMTTSERQSSLSVELATARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAYIKEFDRAHMMRGC
PFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAIPAGVAMPTIAANGQRLVFWFCGERAALGQSEVNELAMIILH
ALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLIN

Specific function: Positive regulator of the rhiABC operon [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26429; Mature: 26298

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYMTTSERQSSLSVELATARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLI
CCCCCCCCHHHHCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHH
ESSLPAAYIKEFDRAHMMRGCPFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAI
CCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHC
PAGVAMPTIAANGQRLVFWFCGERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNAL
CCCCCCCEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
STRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI
CCCEEEEEEEECCCCCEEEECEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
N
C
>Mature Secondary Structure 
SYMTTSERQSSLSVELATARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLI
CCCCCCCHHHHCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHH
ESSLPAAYIKEFDRAHMMRGCPFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAI
CCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHC
PAGVAMPTIAANGQRLVFWFCGERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNAL
CCCCCCCEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
STRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI
CCCEEEEEEEECCCCCEEEECEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]