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The map label for this gene is ybiS [C]

Identifier: 209550209

GI number: 209550209

Start: 2673137

End: 2674528

Strand: Direct

Name: ybiS [C]

Synonym: Rleg2_2629

Alternate gene names: 209550209

Gene position: 2673137-2674528 (Clockwise)

Preceding gene: 209550205

Following gene: 209550216

Centisome position: 58.91

GC content: 63.65

Gene sequence:

>1392_bases
GTGAATCGTTTTTTAAAGTCGGCATTTTCGCTTGCGGCCGTGCTCGTAGCCATTGCGGCTGCAGCACCGGAGGCCGGCGC
GCAGCAGTTCCGTGACCGCCGCCAGAGTGATGTCGTGCTCGTCACCCCGAGCGGCGAAATCCTCGACTATGTCCCGCGCG
GCTATATCTACGCCCGCGACCGCAGCGGCAACCGCGTGCTGATCGACGACTACGGCAATGTCGTCGCCACCGAGATGCGC
GCCCGCGGCTACTATCCGCCGCGGCCCGGCCCGCGCGACGTCTATGCCGACCAGAACGGCAACGATCCCTATTACGCCGA
CGATGGCGACACACGTTACTCCGAGCGCGGTGCGGTCACCGGCGGCATCCCGCGCGATGCGGCGATCGAACGCCAGCCGC
TCGGCGAGCAGCCCTATCCCCAGGATAACAGTATCGGCAATCCGCAGTCCGGCGACGATTATGCCTCGATCGATCCCGAC
CAGCAGATTCCGCCCGCCGACGCGCCGAAGGCCGCGCCGGATGAACCCGTCATCACGCTGAAGAACAAGTCGAAGCCGGA
GATCGTCGCGCTGCAGGTCTTCCTCGACCGCGCCGGCATCTCGCCCGGCGTCATCGACGGCCATATGGGCTCGAACGTCA
CCAAGTCGGTCTATGCCTATGACCAGATGACCGGCTCCAAACTCGACCCGAACGACACCGACGCCATTCTGGAAGAGCTG
CGCATGAACGGCGGCCTGCCGGTCGTCAGCTACACCATTACGCCGGCCGATGCCGCCGGCCCCTACGTCGCAGAGATCCC
GGAAGACTATTCGCATAAGGCGCTGCTGCCGTCGCTTGCCTATACATCGACCACCGAAATGCTGGCCGAGCGCTTCCACA
TGGACGAGGCCTTCCTCAAGGAAATGAACCCCGGCGCTGATTTCAGCGTTGCCGGCACTGTCATCAAGGTCGTCAATCCC
GGTGAGCCGAAGAGCGGCGAAGTTGCCCGCATCATCGCCGACAAGGGCCGCAAGCAGGTCTTTGCCTATGATAGCGCCGG
CAATCCTATTGCCGCCTATCCGGCATCGATCGGCTCCACCGACACACCCTCCCCGTCGGGCATCGTGACGGTCGAGCGCG
TCGCCTTCAATCCCGGTTACACCTATAATCCGAAGATCAATTTCCAGCAGGGCGCCAACGACAAGATCCTCAACATTCCG
CCCGGCCCGAACGGCCCGGTCGGTACCGTCTGGATGGCGCTCTCCAAGCCGACCTACGGCATCCACGGCACGCCCGAGCC
TTCGAAGATCGGCCGCACCCAGAGCCACGGCTGCATCCGTCTGACCAACTGGGACGCAACCGAGCTTGCCAAGATGGTCA
AGCCGGGAGTGACGGTCGAATTCGTCGATTGA

Upstream 100 bases:

>100_bases
AGTGATTTTCATATTTTGTTCAGCACGGTTTCATAAATTCCACACTAGCGTCAAAATTCGCAGGTGTGTGTCGGCCTAGT
CACTGTTCGAGGTGTGAGAC

Downstream 100 bases:

>100_bases
AGCCGGGGTGATAACGACACGGAAAAGGCCGCCGGATCGCTCCGGCGGCCTTTTCGGTTTATACGGGGAATGTTCAGGCC
GCCGTCGCCATCCGGGGCGA

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: Spore protein YkuD homolog [H]

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MNRFLKSAFSLAAVLVAIAAAAPEAGAQQFRDRRQSDVVLVTPSGEILDYVPRGYIYARDRSGNRVLIDDYGNVVATEMR
ARGYYPPRPGPRDVYADQNGNDPYYADDGDTRYSERGAVTGGIPRDAAIERQPLGEQPYPQDNSIGNPQSGDDYASIDPD
QQIPPADAPKAAPDEPVITLKNKSKPEIVALQVFLDRAGISPGVIDGHMGSNVTKSVYAYDQMTGSKLDPNDTDAILEEL
RMNGGLPVVSYTITPADAAGPYVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLKEMNPGADFSVAGTVIKVVNP
GEPKSGEVARIIADKGRKQVFAYDSAGNPIAAYPASIGSTDTPSPSGIVTVERVAFNPGYTYNPKINFQQGANDKILNIP
PGPNGPVGTVWMALSKPTYGIHGTPEPSKIGRTQSHGCIRLTNWDATELAKMVKPGVTVEFVD

Sequences:

>Translated_463_residues
MNRFLKSAFSLAAVLVAIAAAAPEAGAQQFRDRRQSDVVLVTPSGEILDYVPRGYIYARDRSGNRVLIDDYGNVVATEMR
ARGYYPPRPGPRDVYADQNGNDPYYADDGDTRYSERGAVTGGIPRDAAIERQPLGEQPYPQDNSIGNPQSGDDYASIDPD
QQIPPADAPKAAPDEPVITLKNKSKPEIVALQVFLDRAGISPGVIDGHMGSNVTKSVYAYDQMTGSKLDPNDTDAILEEL
RMNGGLPVVSYTITPADAAGPYVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLKEMNPGADFSVAGTVIKVVNP
GEPKSGEVARIIADKGRKQVFAYDSAGNPIAAYPASIGSTDTPSPSGIVTVERVAFNPGYTYNPKINFQQGANDKILNIP
PGPNGPVGTVWMALSKPTYGIHGTPEPSKIGRTQSHGCIRLTNWDATELAKMVKPGVTVEFVD
>Mature_463_residues
MNRFLKSAFSLAAVLVAIAAAAPEAGAQQFRDRRQSDVVLVTPSGEILDYVPRGYIYARDRSGNRVLIDDYGNVVATEMR
ARGYYPPRPGPRDVYADQNGNDPYYADDGDTRYSERGAVTGGIPRDAAIERQPLGEQPYPQDNSIGNPQSGDDYASIDPD
QQIPPADAPKAAPDEPVITLKNKSKPEIVALQVFLDRAGISPGVIDGHMGSNVTKSVYAYDQMTGSKLDPNDTDAILEEL
RMNGGLPVVSYTITPADAAGPYVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLKEMNPGADFSVAGTVIKVVNP
GEPKSGEVARIIADKGRKQVFAYDSAGNPIAAYPASIGSTDTPSPSGIVTVERVAFNPGYTYNPKINFQQGANDKILNIP
PGPNGPVGTVWMALSKPTYGIHGTPEPSKIGRTQSHGCIRLTNWDATELAKMVKPGVTVEFVD

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787356, Length=192, Percent_Identity=28.6458333333333, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788299, Length=187, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 49779; Mature: 49779

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFLKSAFSLAAVLVAIAAAAPEAGAQQFRDRRQSDVVLVTPSGEILDYVPRGYIYARD
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCCCHHHHHCCCCEEEEEC
RSGNRVLIDDYGNVVATEMRARGYYPPRPGPRDVYADQNGNDPYYADDGDTRYSERGAVT
CCCCEEEEECCCCEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCC
GGIPRDAAIERQPLGEQPYPQDNSIGNPQSGDDYASIDPDQQIPPADAPKAAPDEPVITL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
KNKSKPEIVALQVFLDRAGISPGVIDGHMGSNVTKSVYAYDQMTGSKLDPNDTDAILEEL
CCCCCCCEEEEEEEHHHCCCCCCCEECCCCCCHHHHEEEHHHCCCCCCCCCHHHHHHHHH
RMNGGLPVVSYTITPADAAGPYVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLK
HHCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCHHHHH
EMNPGADFSVAGTVIKVVNPGEPKSGEVARIIADKGRKQVFAYDSAGNPIAAYPASIGST
HCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCCCC
DTPSPSGIVTVERVAFNPGYTYNPKINFQQGANDKILNIPPGPNGPVGTVWMALSKPTYG
CCCCCCCEEEEEEEEECCCCEECCEECCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCC
IHGTPEPSKIGRTQSHGCIRLTNWDATELAKMVKPGVTVEFVD
CCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MNRFLKSAFSLAAVLVAIAAAAPEAGAQQFRDRRQSDVVLVTPSGEILDYVPRGYIYARD
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCCCHHHHHCCCCEEEEEC
RSGNRVLIDDYGNVVATEMRARGYYPPRPGPRDVYADQNGNDPYYADDGDTRYSERGAVT
CCCCEEEEECCCCEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHCCCCCC
GGIPRDAAIERQPLGEQPYPQDNSIGNPQSGDDYASIDPDQQIPPADAPKAAPDEPVITL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
KNKSKPEIVALQVFLDRAGISPGVIDGHMGSNVTKSVYAYDQMTGSKLDPNDTDAILEEL
CCCCCCCEEEEEEEHHHCCCCCCCEECCCCCCHHHHEEEHHHCCCCCCCCCHHHHHHHHH
RMNGGLPVVSYTITPADAAGPYVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLK
HHCCCCEEEEEEECCCCCCCCCHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCHHHHH
EMNPGADFSVAGTVIKVVNPGEPKSGEVARIIADKGRKQVFAYDSAGNPIAAYPASIGST
HCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEECCCCCCCC
DTPSPSGIVTVERVAFNPGYTYNPKINFQQGANDKILNIPPGPNGPVGTVWMALSKPTYG
CCCCCCCEEEEEEEEECCCCEECCEECCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCC
IHGTPEPSKIGRTQSHGCIRLTNWDATELAKMVKPGVTVEFVD
CCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA