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The map label for this gene is rpoE [H]

Identifier: 209550105

GI number: 209550105

Start: 2554672

End: 2555187

Strand: Direct

Name: rpoE [H]

Synonym: Rleg2_2522

Alternate gene names: 209550105

Gene position: 2554672-2555187 (Clockwise)

Preceding gene: 209550104

Following gene: 209550106

Centisome position: 56.3

GC content: 65.12

Gene sequence:

>516_bases
GTGAAAACACCCGCACCCGAAAGTTTCGAGGGCCAGATCCTGGCCCTCCTTCCCTCGCTCAGGCGCTATTCGCGTAGCCT
GACGCGCTCGGATGCCGATGGCGAGGATCTGCTGCAAGACTGTGTCGAGAAGGTGCTGGCGCGCCGTGGCCAATGGCGCG
GCCTCAACCTGCGCGGCTGGGTCCTGACCATTATGACCAATCTTTACCGCAACGGCCGGCGCGGCAAGGCGCGCGACGGC
CTGGTCGAGCTTGACGCCGCCGGGGACATGGTCGCTCCCGAATCGCTTGCCGATCCGCTGGAGCGCGCCCGGCTCGATAA
CGCACTGAACAGCCTTTCGGAGGAGCACCGCGCCGTGCTGATGCTCGTGGTCATCGAAGGGTACACGTACAGCGAGGTTG
CCGCTTCCCTCGACATTCCCATCGGCACCGTCATGTCCCGGCTGTCGCGCGCCCGCCAGCGCGTCGCCGAGAGGCTGAAG
GCCGATAACGTCATTACGCTTCGGAGACCGAAATGA

Upstream 100 bases:

>100_bases
TATTACTGGGTCAAGGACAAGAAGGCGGGCGACATCACCGGCGATGGCGTCGGCGGCAACTGGGAGCTTGCCAAGCCTTG
ATCATCAGAAAGCGGCTGGC

Downstream 100 bases:

>100_bases
ACGAAACCAACCCGATCGTCACCGAAGCCGATCTCCACGCCTATGCCGACGGCCAGCTGCCGGAAACCGCGCGCGCCCGC
GTCGAGGCCTTCCTTGCCGA

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MKTPAPESFEGQILALLPSLRRYSRSLTRSDADGEDLLQDCVEKVLARRGQWRGLNLRGWVLTIMTNLYRNGRRGKARDG
LVELDAAGDMVAPESLADPLERARLDNALNSLSEEHRAVLMLVVIEGYTYSEVAASLDIPIGTVMSRLSRARQRVAERLK
ADNVITLRRPK

Sequences:

>Translated_171_residues
MKTPAPESFEGQILALLPSLRRYSRSLTRSDADGEDLLQDCVEKVLARRGQWRGLNLRGWVLTIMTNLYRNGRRGKARDG
LVELDAAGDMVAPESLADPLERARLDNALNSLSEEHRAVLMLVVIEGYTYSEVAASLDIPIGTVMSRLSRARQRVAERLK
ADNVITLRRPK
>Mature_171_residues
MKTPAPESFEGQILALLPSLRRYSRSLTRSDADGEDLLQDCVEKVLARRGQWRGLNLRGWVLTIMTNLYRNGRRGKARDG
LVELDAAGDMVAPESLADPLERARLDNALNSLSEEHRAVLMLVVIEGYTYSEVAASLDIPIGTVMSRLSRARQRVAERLK
ADNVITLRRPK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19142; Mature: 19142

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPAPESFEGQILALLPSLRRYSRSLTRSDADGEDLLQDCVEKVLARRGQWRGLNLRGW
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHH
VLTIMTNLYRNGRRGKARDGLVELDAAGDMVAPESLADPLERARLDNALNSLSEEHRAVL
HHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
MLVVIEGYTYSEVAASLDIPIGTVMSRLSRARQRVAERLKADNVITLRRPK
HEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
>Mature Secondary Structure
MKTPAPESFEGQILALLPSLRRYSRSLTRSDADGEDLLQDCVEKVLARRGQWRGLNLRGW
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHH
VLTIMTNLYRNGRRGKARDGLVELDAAGDMVAPESLADPLERARLDNALNSLSEEHRAVL
HHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEE
MLVVIEGYTYSEVAASLDIPIGTVMSRLSRARQRVAERLKADNVITLRRPK
HEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]