Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
---|---|
Accession | NC_011369 |
Length | 4,537,948 |
Click here to switch to the map view.
The map label for this gene is 209550041
Identifier: 209550041
GI number: 209550041
Start: 2499308
End: 2501167
Strand: Direct
Name: 209550041
Synonym: Rleg2_2458
Alternate gene names: NA
Gene position: 2499308-2501167 (Clockwise)
Preceding gene: 209550040
Following gene: 209550044
Centisome position: 55.08
GC content: 51.08
Gene sequence:
>1860_bases ATGATACTGTCTGACTCTGCGTCTGAACTTATCAAGAGGCTCAACGAGGTCGACGAGTCCGAAGATCTTGAGGCAAAGAC AGTCAGTGGGTCGGACCCGGGAAAATCTGTTTATGAGACCATTTGCGCTATGGCGAACGAGCCAGGATTGGGCGGAGGAG TGGTACTTCTCGGAGTTTCCAAAGAGATCGGTCTCTTCCCTTTTTACACTGCAACCGGAGTGCGCGATCCTGATAAATTG AGTAGTGAGATCGTTTCTTCATGCAGCTCGCTGTTCAATTCCCCAGTACGGGTCAATGTCACACCGGAAAAGGTTGGCAG AAAGATCGTCCTTAAAATCACTGTTCCAGAAGCCGCTAGAGGACAGAAGCCCGTATATTTTAAAGCAACAGGCCTACCGA AAGGCGCTTATAGACGGTTGGGACCAACCGACGTCCGATGCACCGATGAAGATCTGTCCGCATTCTTTATGGATCAAAGC CACGAGTCAGCAGACAGTCAGATCGTAAAGGAAGCATCCTGGAATGACATCGACCGGAATGCGATCCAAGCATACCGACG ATCGCGAAAGGAAGCCTATCCAGCTGCGGCTGAGCTGGAAATGAACGACGAAGACATGCTCGAAGCCCTTGGAGCAGTAC GCATACGCGGAGGGAAAATTCGCTGTACTCTTGCGGGCCTGCTTCTTTTCGGGTCACAGCCGGCGCTAAGGCGCCATTTC CCCAGCATGCGTTTTGACTATATCCGTGTTCCGTCGCTGGGTTGGGCGGAGAACACAGAGATGCCGTTTGAAGCGCTCGA AATGCGGGGATCTCTGTTGCTCGTAGCACAAAAAATCATGGCTGCAATTGCGGACGATCTACCGAAAGCGTTCAAGATCG AAGATCACCACAGCGGGCAGCGGACAGAGATGCCGGTATTGCCTTTTCGTGTAATTCGCGAGGCGGTTGTTAACGCGCTG ATGCACCGGAATTACCGCGTGAATAAGCCAGTGCAAATATTGAGATATCCAAACCGCCTAGTGATCAAAAACCCCGGGTA TTCATTGAAAGCAGAAGAAAGGTTCGATGAATCTGGTTCCGCTTTAAGAAATCCAGTGGTTGCTGAGGTACTGCACGAAA CGCGCTACGCGGAGACTAAAGGCAGTGGAATCCGTGTTATGAAGCGGCTCATGGAGAAAAGCGGGCTGGCTTCACCCACG TTTGACTCGGATCGGACGCTAGACGAATTCACAGCTACGTTTCTCTTCCACCATTTCTTAGACGAGAAGGACATTGCTTG GCTTGCGAATTTTAAATCGCTGGATCTCTCGCAAGACCAGATGAAGGGAATGATCTTCCTCCGAGAGGTGGGGGCGATAA GTAACTCAATCTATCGCGGCCTAAACTCCGTTGACACACTGACCGCATCAAAAAGCTTACGGAAGCTAAGAACGTTAGAT CTTATCGTAGAGCCATCGGTGGGCTCGAAAAACACCTATGTGCCGGGTCCTGCGTTCGCCAAACTCGCTAACAAGGATGG TTCAACCGCGACGAGCACCGTTAGCATGGATGCTAAGATCGATGACGTCGATGCTAATCGGTTTTTACAGGTCCAGATGG GTGAAATGCCAGATAAACTTCGGAAGGACGTTCTGTTTGCGCAGCTGCAGGCTCGACTTCAGCCAGAAAAAGCAATGGAT TTGATTGTGAGGCTGTGCAAGTGGAGGGCGCTATCGCTCGCAGAGATAGCTAAGCTCTTGGACAAATCCTCAGCGCACGT CTCCACCAAATACGTTCAGTCGCTGGTTTCAGAAGGGCGTCTCCAGTACACCTACCCTGAAATGGTGCAGCACCCTCATC AACGCTATGTGGCTAAGTAG
Upstream 100 bases:
>100_bases CCGATTGTCATTCAACGCGATCACGAGGCAGATGACGGCGTGAGCGTGCAGGTCATCGCCCTGGTACGGCGGGTGATGAA CGAGATGCCGGGATTATGAG
Downstream 100 bases:
>100_bases CCCCAAGGTCACGCAGCGGAGTGCCGTAATCCTTTCAGATCAAACCCGCGGCAGGCGTGCGCAATTTCCTGCAGCAGCCA CCGCCTCGGGGGCGTGCACA
Product: transcriptional regulator
Products: NA
Alternate protein names: Divergent AAA Domain Protein; ATP-Dependent DNA Helicase; ATP-Dependent DNA Helicase RecG-Related Protein; Divergent AAA Domain Family Protein; AAA-4 Family Protein; Divergent AAA ATP; Transcription Regulator HTH/DeoR Family; Divergent AAA Domain Family; ATPase AAA Family
Number of amino acids: Translated: 619; Mature: 619
Protein sequence:
>619_residues MILSDSASELIKRLNEVDESEDLEAKTVSGSDPGKSVYETICAMANEPGLGGGVVLLGVSKEIGLFPFYTATGVRDPDKL SSEIVSSCSSLFNSPVRVNVTPEKVGRKIVLKITVPEAARGQKPVYFKATGLPKGAYRRLGPTDVRCTDEDLSAFFMDQS HESADSQIVKEASWNDIDRNAIQAYRRSRKEAYPAAAELEMNDEDMLEALGAVRIRGGKIRCTLAGLLLFGSQPALRRHF PSMRFDYIRVPSLGWAENTEMPFEALEMRGSLLLVAQKIMAAIADDLPKAFKIEDHHSGQRTEMPVLPFRVIREAVVNAL MHRNYRVNKPVQILRYPNRLVIKNPGYSLKAEERFDESGSALRNPVVAEVLHETRYAETKGSGIRVMKRLMEKSGLASPT FDSDRTLDEFTATFLFHHFLDEKDIAWLANFKSLDLSQDQMKGMIFLREVGAISNSIYRGLNSVDTLTASKSLRKLRTLD LIVEPSVGSKNTYVPGPAFAKLANKDGSTATSTVSMDAKIDDVDANRFLQVQMGEMPDKLRKDVLFAQLQARLQPEKAMD LIVRLCKWRALSLAEIAKLLDKSSAHVSTKYVQSLVSEGRLQYTYPEMVQHPHQRYVAK
Sequences:
>Translated_619_residues MILSDSASELIKRLNEVDESEDLEAKTVSGSDPGKSVYETICAMANEPGLGGGVVLLGVSKEIGLFPFYTATGVRDPDKL SSEIVSSCSSLFNSPVRVNVTPEKVGRKIVLKITVPEAARGQKPVYFKATGLPKGAYRRLGPTDVRCTDEDLSAFFMDQS HESADSQIVKEASWNDIDRNAIQAYRRSRKEAYPAAAELEMNDEDMLEALGAVRIRGGKIRCTLAGLLLFGSQPALRRHF PSMRFDYIRVPSLGWAENTEMPFEALEMRGSLLLVAQKIMAAIADDLPKAFKIEDHHSGQRTEMPVLPFRVIREAVVNAL MHRNYRVNKPVQILRYPNRLVIKNPGYSLKAEERFDESGSALRNPVVAEVLHETRYAETKGSGIRVMKRLMEKSGLASPT FDSDRTLDEFTATFLFHHFLDEKDIAWLANFKSLDLSQDQMKGMIFLREVGAISNSIYRGLNSVDTLTASKSLRKLRTLD LIVEPSVGSKNTYVPGPAFAKLANKDGSTATSTVSMDAKIDDVDANRFLQVQMGEMPDKLRKDVLFAQLQARLQPEKAMD LIVRLCKWRALSLAEIAKLLDKSSAHVSTKYVQSLVSEGRLQYTYPEMVQHPHQRYVAK >Mature_619_residues MILSDSASELIKRLNEVDESEDLEAKTVSGSDPGKSVYETICAMANEPGLGGGVVLLGVSKEIGLFPFYTATGVRDPDKL SSEIVSSCSSLFNSPVRVNVTPEKVGRKIVLKITVPEAARGQKPVYFKATGLPKGAYRRLGPTDVRCTDEDLSAFFMDQS HESADSQIVKEASWNDIDRNAIQAYRRSRKEAYPAAAELEMNDEDMLEALGAVRIRGGKIRCTLAGLLLFGSQPALRRHF PSMRFDYIRVPSLGWAENTEMPFEALEMRGSLLLVAQKIMAAIADDLPKAFKIEDHHSGQRTEMPVLPFRVIREAVVNAL MHRNYRVNKPVQILRYPNRLVIKNPGYSLKAEERFDESGSALRNPVVAEVLHETRYAETKGSGIRVMKRLMEKSGLASPT FDSDRTLDEFTATFLFHHFLDEKDIAWLANFKSLDLSQDQMKGMIFLREVGAISNSIYRGLNSVDTLTASKSLRKLRTLD LIVEPSVGSKNTYVPGPAFAKLANKDGSTATSTVSMDAKIDDVDANRFLQVQMGEMPDKLRKDVLFAQLQARLQPEKAMD LIVRLCKWRALSLAEIAKLLDKSSAHVSTKYVQSLVSEGRLQYTYPEMVQHPHQRYVAK
Specific function: Unknown
COG id: COG2865
COG function: function code K; Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69044; Mature: 69044
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILSDSASELIKRLNEVDESEDLEAKTVSGSDPGKSVYETICAMANEPGLGGGVVLLGVS CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEC KEIGLFPFYTATGVRDPDKLSSEIVSSCSSLFNSPVRVNVTPEKVGRKIVLKITVPEAAR CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHCCEEEEEEECCCCCC GQKPVYFKATGLPKGAYRRLGPTDVRCTDEDLSAFFMDQSHESADSQIVKEASWNDIDRN CCCCEEEEECCCCHHHHHCCCCCCCEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH AIQAYRRSRKEAYPAAAELEMNDEDMLEALGAVRIRGGKIRCTLAGLLLFGSQPALRRHF HHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHEEECCCEEEEHEEHHHHHCCCHHHHHCC PSMRFDYIRVPSLGWAENTEMPFEALEMRGSLLLVAQKIMAAIADDLPKAFKIEDHHSGQ CCCCCCEEECCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCC RTEMPVLPFRVIREAVVNALMHRNYRVNKPVQILRYPNRLVIKNPGYSLKAEERFDESGS CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCCHHHHCCCCCH ALRNPVVAEVLHETRYAETKGSGIRVMKRLMEKSGLASPTFDSDRTLDEFTATFLFHHFL HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH DEKDIAWLANFKSLDLSQDQMKGMIFLREVGAISNSIYRGLNSVDTLTASKSLRKLRTLD CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LIVEPSVGSKNTYVPGPAFAKLANKDGSTATSTVSMDAKIDDVDANRFLQVQMGEMPDKL EEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCEECCCCCCCEEEEECCCCCHHH RKDVLFAQLQARLQPEKAMDLIVRLCKWRALSLAEIAKLLDKSSAHVSTKYVQSLVSEGR HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCC LQYTYPEMVQHPHQRYVAK EEEECHHHHCCCHHHHCCC >Mature Secondary Structure MILSDSASELIKRLNEVDESEDLEAKTVSGSDPGKSVYETICAMANEPGLGGGVVLLGVS CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEC KEIGLFPFYTATGVRDPDKLSSEIVSSCSSLFNSPVRVNVTPEKVGRKIVLKITVPEAAR CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHCCEEEEEEECCCCCC GQKPVYFKATGLPKGAYRRLGPTDVRCTDEDLSAFFMDQSHESADSQIVKEASWNDIDRN CCCCEEEEECCCCHHHHHCCCCCCCEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH AIQAYRRSRKEAYPAAAELEMNDEDMLEALGAVRIRGGKIRCTLAGLLLFGSQPALRRHF HHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHEEECCCEEEEHEEHHHHHCCCHHHHHCC PSMRFDYIRVPSLGWAENTEMPFEALEMRGSLLLVAQKIMAAIADDLPKAFKIEDHHSGQ CCCCCCEEECCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCC RTEMPVLPFRVIREAVVNALMHRNYRVNKPVQILRYPNRLVIKNPGYSLKAEERFDESGS CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCCHHHHCCCCCH ALRNPVVAEVLHETRYAETKGSGIRVMKRLMEKSGLASPTFDSDRTLDEFTATFLFHHFL HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH DEKDIAWLANFKSLDLSQDQMKGMIFLREVGAISNSIYRGLNSVDTLTASKSLRKLRTLD CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LIVEPSVGSKNTYVPGPAFAKLANKDGSTATSTVSMDAKIDDVDANRFLQVQMGEMPDKL EEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCEECCCCCCCEEEEECCCCCHHH RKDVLFAQLQARLQPEKAMDLIVRLCKWRALSLAEIAKLLDKSSAHVSTKYVQSLVSEGR HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCC LQYTYPEMVQHPHQRYVAK EEEECHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA