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The map label for this gene is ybcK

Identifier: 209400302

GI number: 209400302

Start: 2968757

End: 2970283

Strand: Reverse

Name: ybcK

Synonym: ECH74115_3227

Alternate gene names: 209400302

Gene position: 2970283-2968757 (Counterclockwise)

Preceding gene: 209400746

Following gene: 209398795

Centisome position: 53.31

GC content: 35.49

Gene sequence:

>1527_bases
ATGAAAAAAGCCATAGCATATATGCGATTTTCATCACCAGGTCAGATGTCTGGCGACTCATTAAACCGACAGAGAAGACT
TATTGCTGAATGGTTAAAGGTAAATAGTGATTATTATCTTGATACCATAACATATGAAGATTTAGGATTAAGTGCATTCA
AAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACA
TTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCA
CGGTATTGATGTTATAACTCTTTGCGACAATACAGTCTATAATATTGACTCTTTGAATGAGCCATATTCATTAATAAAAG
CCATACTTATAGCACAAAGGGCAAATGAAGAAAGCGAGATAAAGTCAAGTCGGGTTAAATTATCATGGAAGAAAAAACGG
CAGGATGCACTGGAATCAGGTACGATTATGACGGCGTCTTGTCCGAGATGGCTCTCCTTAGATGACAAAAGAACGGCTTT
TGTTCCAGACCCCGACAGGGTGAAAACTATTGAGCTAATTTTTAAACTCAGGATGGAAAGGCGCTCATTGAATGCAATAG
CCAAGTATTTAAATGATCATGCTGTAAAGAATTTCTCAGGAAAAGAAAGTGCATGGGGACCTTCTGTAATTGAAAAATTA
TTAGCGAATAAAGCTCTGATAGGTATATGCGTACCTTCATATCGTGCAAGAGGGAAAGGGATAAGTGAAATCGCTGGCTA
TTATCCCAGAGTCATATCAGATGATTTGTTTTACGCTGTACAGGAAATTCGGTTGGCACCTTTTGGTATTAGCAATAGTA
GCAAGAATCCTATGCTAATAAATCTACTTCGAACAGTTATGAAGTGTGAGGCTTGTGGTAATACCATGATTGTTCATGCG
GTATCTGGAAGTTTGCATGGCTATTATGTTTGTCCGATGAGAAGATTACATCGATGTGACAGGCCATCAATAAAAAGAGA
TTTGGTTGATTATAATATCATTAATGAATTGCTTTTTAATTGTAGCAAAATTCAACCAGTTGAAAACAAGAAAGATGCTA
ATGAAACTTTAGAGTTAAAAATTATTGAGCTTCAGATGAAAATTAATAATTTAATCGTTGCATTGTCTGTCGCGCCTGAA
GTTACCGCTATAGCAGAGAAAATAAGACTATTAGATAAGGAATTACGAAGGGCTTCGGTATCATTGAAAACTTTGAAGAG
TAAAGGTGTAAATTCATTCAGTGATTTTTATGCTATTGACTTAACCAGTAAAAATGGACGAGAGTTATGCCGTACACTTG
CCTATAAAACATTCGAAAAAATCATAATTAATACGGATAATAAAACCTGTGATATCTATTTTATGAATGGCATTGTTTTT
AAACACTATCCTTTAATGAAAGTAATATCTGCCCAGCAGGCGATAAGTGCTCTCAAATATATGGTTGATGGTGAGATTTA
TTTCTAA

Upstream 100 bases:

>100_bases
TCAAGATAATGTGATCTTAATTGTCTTTTTAAATAAAAATTAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGC
ATACGTTAGCAGGTGTCACC

Downstream 100 bases:

>100_bases
ATAATGATCTCGGATTTTAAGTTATGCTATGATGATAAAGTGCAAGACAGAATTAATTATCTTTAACGAAACTTAATGGG
TAATTACTTTGTTTGCTCCC

Product: recombinase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTT
LLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKR
QDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKL
LANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHA
VSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPE
VTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVF
KHYPLMKVISAQQAISALKYMVDGEIYF

Sequences:

>Translated_508_residues
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTT
LLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKR
QDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKL
LANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHA
VSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPE
VTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVF
KHYPLMKVISAQQAISALKYMVDGEIYF
>Mature_508_residues
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTT
LLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKR
QDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKL
LANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHA
VSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPE
VTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVF
KHYPLMKVISAQQAISALKYMVDGEIYF

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain

Homologues:

Organism=Escherichia coli, GI1786756, Length=508, Percent_Identity=100, Blast_Score=1046, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBCK_ECOLI (P77698)

Other databases:

- EMBL:   U82598
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   F64786
- RefSeq:   AP_001189.1
- RefSeq:   NP_415076.1
- ProteinModelPortal:   P77698
- SMR:   P77698
- DIP:   DIP-11332N
- STRING:   P77698
- PRIDE:   P77698
- EnsemblBacteria:   EBESCT00000003004
- EnsemblBacteria:   EBESCT00000015947
- GeneID:   945166
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW0532
- KEGG:   eco:b0544
- EchoBASE:   EB3392
- EcoGene:   EG13627
- eggNOG:   COG1961
- GeneTree:   EBGT00050000011909
- HOGENOM:   HBG468586
- OMA:   TILRSES
- ProtClustDB:   CLSK879972
- BioCyc:   EcoCyc:G6300-MONOMER
- Genevestigator:   P77698
- InterPro:   IPR011109
- InterPro:   IPR006119
- Gene3D:   G3DSA:3.40.50.1390
- SMART:   SM00857

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase; SSF53041 Resolv_N

EC number: NA

Molecular weight: Translated: 57528; Mature: 57528

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQS
CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCCCCC
GAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVY
CCHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEE
NIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSL
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHEEEHHHHHHHHHHHCCCEEEECCCCCCCC
DDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKL
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
LANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLI
HHCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
NLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFN
HHHHHHHHHHHCCCEEEEEEECCCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHC
CSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASV
CCCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
SLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVF
HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCEEE
KHYPLMKVISAQQAISALKYMVDGEIYF
CCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQS
CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCCCCC
GAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVY
CCHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEE
NIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSL
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHEEEHHHHHHHHHHHCCCEEEECCCCCCCC
DDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKL
CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
LANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLI
HHCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
NLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFN
HHHHHHHHHHHCCCEEEEEEECCCCCEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHC
CSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASV
CCCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
SLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVF
HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCEEE
KHYPLMKVISAQQAISALKYMVDGEIYF
CCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503