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The map label for this gene is yoqD [H]

Identifier: 209400174

GI number: 209400174

Start: 2699844

End: 2700566

Strand: Reverse

Name: yoqD [H]

Synonym: ECH74115_2913

Alternate gene names: 209400174

Gene position: 2700566-2699844 (Counterclockwise)

Preceding gene: 209400935

Following gene: 209396776

Centisome position: 48.47

GC content: 46.61

Gene sequence:

>723_bases
ATGAATGAGCTGATAAATAGCAATGCCATCAAAATGACAAGCATTGAAATCGCTGAGTTGGTGGGAAGCCAACACGGTAA
TGTCAGAATATCAATAGAACGTCTGGCAAAGCGTGGGGTGATTCAACTTCCTTCAATGCAAAAAGTTGAAAATAAACAAA
CAATTAGCCCTAACAAATTCACAAGCGTGTATATATTCGAAGGCGAACAAGGTAAGCGAGACAGCATTATTGTCGTCGCT
CAGTTGTCGCCGGAATTCACCGCTCGCCTTGTTGACCGCTGGCGAGAACTCGAAGGGGCAACCGCGAAAATACCACAAAC
CTTTTCTGAGGCATTGCGCCTTGCGGCCGACCTTGAAGACCAGAAGGCTGAACTGGAGAAACAGCTTGCTCTCGCAGCAC
CTAAAGTTGAGTTTGCCGATCGAGTTGGCGAGGCCAGCGGAATTTTGATTGGAAACTTTGCAAAGGTTGTTGGTATTGGT
CCAAACAAACGGTTTGCGTGGATGCGCGATCACAAAATCCTTATTGCTTCAGGTGCCCGGCGCAATGTGCCAATGCAGGA
ATATATGGATCGCGGCTATTTCACAGTGAAAGAAACAGCGGTCAATACAAATCACGGAATACAGATATCGTTCACCACAA
AAATCACCGGGCGTGGTCAACAGTGGCTGACAAGAAAGCTGCTAGATAACGGAATGCTTAAAGTAACAGGGGAGGCTGCT
TAA

Upstream 100 bases:

>100_bases
TGCCGCCTTCACTGCATCGCTACTGACAATTGACAACTTAACAAACCCAGCTTCGGCTGGGTTTTTTATTGCTGAATTTT
CAATGTGAGAGGACATGACA

Downstream 100 bases:

>100_bases
TGGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGTTTCACCCGGCATTCTCAAATCAGTGGTGGTGCAGC
CCGGAACACGGAACTAAATT

Product: Roi protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MNELINSNAIKMTSIEIAELVGSQHGNVRISIERLAKRGVIQLPSMQKVENKQTISPNKFTSVYIFEGEQGKRDSIIVVA
QLSPEFTARLVDRWRELEGATAKIPQTFSEALRLAADLEDQKAELEKQLALAAPKVEFADRVGEASGILIGNFAKVVGIG
PNKRFAWMRDHKILIASGARRNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA

Sequences:

>Translated_240_residues
MNELINSNAIKMTSIEIAELVGSQHGNVRISIERLAKRGVIQLPSMQKVENKQTISPNKFTSVYIFEGEQGKRDSIIVVA
QLSPEFTARLVDRWRELEGATAKIPQTFSEALRLAADLEDQKAELEKQLALAAPKVEFADRVGEASGILIGNFAKVVGIG
PNKRFAWMRDHKILIASGARRNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA
>Mature_240_residues
MNELINSNAIKMTSIEIAELVGSQHGNVRISIERLAKRGVIQLPSMQKVENKQTISPNKFTSVYIFEGEQGKRDSIIVVA
QLSPEFTARLVDRWRELEGATAKIPQTFSEALRLAADLEDQKAELEKQLALAAPKVEFADRVGEASGILIGNFAKVVGIG
PNKRFAWMRDHKILIASGARRNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA

Specific function: Unknown

COG id: COG3645

COG function: function code S; Uncharacterized phage-encoded protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005039
- InterPro:   IPR014054
- InterPro:   IPR019104 [H]

Pfam domain/function: PF03374 ANT; PF09669 Phage_pRha [H]

EC number: NA

Molecular weight: Translated: 26696; Mature: 26696

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELINSNAIKMTSIEIAELVGSQHGNVRISIERLAKRGVIQLPSMQKVENKQTISPNKF
CCCCCCCCCEEEEHHHHHHHHCCCCCCEEEEHHHHHHCCCEECCCHHHHCCCCCCCCCCE
TSVYIFEGEQGKRDSIIVVAQLSPEFTARLVDRWRELEGATAKIPQTFSEALRLAADLED
EEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCH
QKAELEKQLALAAPKVEFADRVGEASGILIGNFAKVVGIGPNKRFAWMRDHKILIASGAR
HHHHHHHHHHHCCCCHHHHHHCCCCCCEEEECCEEEEEECCCCCEEEEECCEEEEECCCC
RNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA
CCCCHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEECCCC
>Mature Secondary Structure
MNELINSNAIKMTSIEIAELVGSQHGNVRISIERLAKRGVIQLPSMQKVENKQTISPNKF
CCCCCCCCCEEEEHHHHHHHHCCCCCCEEEEHHHHHHCCCEECCCHHHHCCCCCCCCCCE
TSVYIFEGEQGKRDSIIVVAQLSPEFTARLVDRWRELEGATAKIPQTFSEALRLAADLED
EEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCH
QKAELEKQLALAAPKVEFADRVGEASGILIGNFAKVVGIGPNKRFAWMRDHKILIASGAR
HHHHHHHHHHHCCCCHHHHHHCCCCCCEEEECCEEEEEECCCCCEEEEECCEEEEECCCC
RNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA
CCCCHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]