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The map label for this gene is ymdC [H]

Identifier: 209399856

GI number: 209399856

Start: 1409083

End: 1410504

Strand: Direct

Name: ymdC [H]

Synonym: ECH74115_1426

Alternate gene names: 209399856

Gene position: 1409083-1410504 (Clockwise)

Preceding gene: 209396250

Following gene: 209398428

Centisome position: 25.29

GC content: 50.77

Gene sequence:

>1422_bases
TTGCCCCGGCTGGCGAGCGCGGTGCTGCCACTGTGTTCGCAACATCCCGGTCAGTGTGGTCTTTTCCCTCTGGAGAAAAG
TCTGGATGCGTTTGCCGCCCGGTATCGTCTGGCCGAAATGTCAGAGCATACGCTGGATGTTCAGTATTACATCTGGCAGG
ACGATATGTCGGGTCGGTTACTGTTTTCCGCCCTGTTAGCCGCAGCAAAGCGTGGCGTTCGCGTCCGTTTGTTGCTGGAC
GACAACAATACGCCCGGACTTGACGACATTTTACGCTTGCTTGACAGCCATCCCCGCATTGAAGTCCGGCTTTTTAATCC
TTTCTCGTTTCGCTTGCTGCGTCCGCTTGGTTATATCACCGACTTTTCCCGTCTCAATCGCCGTATGCACAATAAAAGTT
TCACTGTCGATGGCGTGGTGACGTTGGTAGGGGGGCGAAATATTGGTGATGCCTATTTTGGGGCAGGGGAAGAGCCACTT
TTTTCGGATTTAGATGTCATGGCAATAGGACCCGTAGTAGAGGACGTTGCCGATGATTTCGCCCGCTACTGGTATTGCAA
ATCGGTTTCACCCTTACAGCAGGTGCTGGATGTCCCGGAAGGTGAAATGGCGGATCGCATCGAGTTACCCGCCTCCTGGC
ATAACGATGCCATGACGCATCGTTACTTACGCAAAATGGAATCCAGTCCGTTTATAAATCATCTGGTTGATGGAACGTTG
CCGCTTATCTGGGCGAAAACACGTTTATTAAGTGATGATCCGGCGAAAGGGGAGGGCAAGGCAAAACGGCATTCACTGTT
ACCGCAGCGCCTGTTCGATATCATGGGCTCACCCAGTGAACGCATCGATATTATCTCTTCCTATTTTGTACCGACACGCG
CAGGTGTGGCGCAACTCTTACGGATGGTGAGAAAAGGGGTAAAGATTGCGATCCTAACCAATTCTCTTGCCGCTAACGAT
GTTGCTGTCGTCCATGCCGGATACGCGCGCTGGCGCAAAAAATTGCTCCGCTATGGCGTGGAATTATATGAACTCAAGCC
GACGCGTGAACAAAGTAGTACGTTACACGATCGCGGCATAACCGGTAATTCCGGTGCCAGCCTGCATGCTAAAACCTTTA
GCATCGATGGTAAAACGGTGTTTATCGGTTCTTTCAATTTCGATCCGCGTTCAACATTGCTCAATACTGAAATGGGCTTC
GTGATAGAGAGCGAAACGCTGGCTCAGTTAATTGATAAACGCTTTATTCAGAGCCAGTATGATGCGGCCTGGCAGCTCCG
TCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTGTTCTCAAAAAAGAACCCGCTACCA
GTTTCTGGAAGCGGGTTATGGTCAGACTGGCGTCGATATTGCCCGTGGAATGGTTATTGTAA

Upstream 100 bases:

>100_bases
ACCCGTCACGCTTTACCCGAACAGGTATACTTTGTCTGTTATGATGAAGAAAACGCCCACCTCTACGAAAGACTCCTTAC
CCAACAAGGAGATGAATGAT

Downstream 100 bases:

>100_bases
ATGTGGCTTAACGGGCTGGTGCTTTATCGTTCTCACGCTTAACAACCGGTTTACCAGAGAACAAAAACTTCAGTAACGGG
ATGCGCAAATGAATTTCATA

Product: phopholipase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMSEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLD
DNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL
FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAAND
VAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGF
VIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIVLKKEPATSFWKRVMVRLASILPVEWLL

Sequences:

>Translated_473_residues
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMSEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLD
DNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL
FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAAND
VAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGF
VIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIVLKKEPATSFWKRVMVRLASILPVEWLL
>Mature_472_residues
PRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMSEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDD
NNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLF
SDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTLP
LIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDV
AVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFV
IESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIVLKKEPATSFWKRVMVRLASILPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=473, Percent_Identity=99.5771670190275, Blast_Score=969, Evalue=0.0,
Organism=Escherichia coli, GI1787007, Length=399, Percent_Identity=22.8070175438596, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53669; Mature: 53537

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMSEHTLDVQYYIWQDDMSGRL
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCHH
LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYIT
HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
DFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDF
HHHHHHHHHCCCCEEECEEEEEECCCCCCCHHCCCCCCCCCCCCCCEEECHHHHHHHHHH
ARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
HHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCH
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGI
HHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
TGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQY
CCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHC
DAAWQLRLDRWGRINWVDRHAKKEIVLKKEPATSFWKRVMVRLASILPVEWLL
CCCEEEEECCCCCCCHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure 
PRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMSEHTLDVQYYIWQDDMSGRL
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCHH
LFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYIT
HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
DFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDF
HHHHHHHHHCCCCEEECEEEEEECCCCCCCHHCCCCCCCCCCCCCCEEECHHHHHHHHHH
ARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTL
HHHHHHCCCHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCH
PLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLL
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
RMVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGI
HHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
TGNSGASLHAKTFSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQY
CCCCCCEEEEEEEEECCCEEEEEECCCCCHHHHCCCCCCEEECHHHHHHHHHHHHHHHHC
DAAWQLRLDRWGRINWVDRHAKKEIVLKKEPATSFWKRVMVRLASILPVEWLL
CCCEEEEECCCCCCCHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]