| Definition | Escherichia coli O157:H7 str. EC4115, complete genome. |
|---|---|
| Accession | NC_011353 |
| Length | 5,572,075 |
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The map label for this gene is arpA [H]
Identifier: 209399314
GI number: 209399314
Start: 5131815
End: 5134001
Strand: Reverse
Name: arpA [H]
Synonym: ECH74115_5486
Alternate gene names: 209399314
Gene position: 5134001-5131815 (Counterclockwise)
Preceding gene: 209397219
Following gene: 209396872
Centisome position: 92.14
GC content: 37.77
Gene sequence:
>2187_bases ATGATTACTCATATTCCTCGTAGTTCTTTCTCTGCAAATATTAATAATACAGCCCAGACAAATGAACACCAAACCCTGAG TGAATTGTTTTATAAAGAACTCGAGGATAAATTTTCTGGCAAGGAGCTGGCGACACCTCTATTAAAAAGCTTCTCAGAGA ACTGTAGACACAATGGTCGCCATATCTTTAGTAACAAGGATTTTGTCATTAAGTTTTCCATATCTGTCTTACAAGCTGAT AAGAAAGAAATTACGATAATTAATAAAAATGAAAACACGACACTCACTCAAACCATTGCTCCAATATTTGAAGAATACCT AATGGAAATTTTACCTCAACGCTCAGACGCTCTTGATAAAAAAGAATTAAATCTAAACTCAGATAGAAAAGAAAAAGAAT TCCCAAGAGTTAAGCTTAATGGTCAATGTTATTTTCCGGGGCGCCCCCAAAACCGTATAGTATGCCGACACATTGCTGCA CAATATATTAATGATATTTATCAGAATGTTGACTACAAACCCCATCAAGATGATTACTCTTCAGCTGAAAAATTTCTCAC TCACTTCAACAAAAAATGCAAAAACCAGACTTTGGCGTTGATTTCCAGCCGTCCTGAGGGGCGTTGCGTTGCTGCCTGCG GTGATTTCGGGCTAGTTATGAAGGCATATTTTGACAAGATGGAATCAAATGACCTCAGTGTTATGGCTGCCATATTATTG GTAGATAACCATGCTTTGACGGTCCGGCTAAGAATAAAGAACACAACTGAAGGATGTATCCATTACGTGGTTTCGGTTTA TGATCCTAATGTAACTAACGATAAAATAAGAATCATGAGCGAAAGTAAAGAGGATATTAAACACTATTCACTGATGGATT TTATGAATGTAGATTATAGCCTCCTGAAATGGTCAAATGATCATGTTATTAACCAATCTGTTGCAATAATTCCAGCACTT CCAAAAGAACAGCTATTGATGCTAAAAGGAACTGTGGATGAAATAACCCCTCCATTATCACCTGCAACGATGAATTTGCT AATGGCAATTGGTCAGAATCACCAACTTAAGCAACTGATGATTCAACTCCAGAAAATGCCAGAACTACATAGAACAGAAA TGTTGACTGCCTATAATAGTATTAACCTCCCCGGTTTATATTTGGCTATAAATTATGGTAATGCGGATATCGTTGAGACT ATTTTTAATTCATTGTCAGAGCCAGGATATGAAGGATTACTCTCGAAAAAAAATCTCATGCATATTCTGGAGGCAAAAGA TAAAAATGGTTTTTCTGGATTATTTTTAGCGATATCACGTAAGGATAAAAATGTTGTAACCTCGATTCTGAACGCCTTAC CTAAACTGGCCGCAACACATCATTTAGATAACGAACAAGTGTATAAATTCCTGAGTGCCAAAAATAGTACGTCCAGCCAT GTTTTATACCATGTTATGGCGAATGGTGATGCCGACATGCTGAAAATTGTTTTGGACGCGTTATCTTTGTTAATTCGCAC ATGTCATTTGACTAAAGAACAGGTACTCGATCTCCTGAAGGCAAAGGATTTTTATGGTTGCCCAGGACTATACCTGGCGA TGCAAAATGGACATAGCGATATCGTGAAAGTTATTCTTGAAGCATTGCCCAGCCTGGCCCAGGAAATTAACATTTCAGCT TCCGATATTGTAGATCTTCTGACCGCTAAAAGTCTTGCGCGCGACACGGGTTTGTTTATGGCCATGCAGCGCGGACATAT GAACGTTATTAATACTATTTTTAACGCATTACCCACTCTGTTTAATACGTTTAAATTCGATAAAAAAAATATGAAGCCCC TCCTCCTGGCAAATAATTCTAATGAATACCCAGGTTTGTTTTCAGCGATACAGCATAAACAGCAAAACGTTGTAGAGATG GTTTATCTTGCTTTATCTGACCATGCACGCCTGTTTGGATTTACCGCTGAAGATATTATGGATTTTTGGCAACACAAAGC GCCACAAAAATACTCTGCCTTTGAGTTGGCTTGTGAATTGGGTCACCGGGTTATTGCTGAATTAATCTTTAATACATTAA ATAAGATGGCTGAAAGCTTTGGCTTTACGGATAACCCTCGATACATTGCGGAGAAAAATTATATGGAAGCTTTACTCAAA AAAGCATCTCCCCATACCGTACGCTAA
Upstream 100 bases:
>100_bases TTGAGCGATTTATGATATTTCTTTAGTTGTAATCATATTAAATTTTTTCACTGTTCTGATAGTTAAAATTCAAGACATCA ATAAACAATGAGATATTTAA
Downstream 100 bases:
>100_bases ATCTTTGCCTGCGCCGATACGCATAAACATCTTCCACATGCCCTTCACGTATGCGGTTTTGTAGTGCGCGCCAGTAATCA GCGCGGAACAGGTCGGCGTG
Product: ShET2 enterotoxin, N- region family
Products: NA
Alternate protein names: Ankyrin-like regulatory protein [H]
Number of amino acids: Translated: 728; Mature: 728
Protein sequence:
>728_residues MITHIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRHNGRHIFSNKDFVIKFSISVLQAD KKEITIINKNENTTLTQTIAPIFEEYLMEILPQRSDALDKKELNLNSDRKEKEFPRVKLNGQCYFPGRPQNRIVCRHIAA QYINDIYQNVDYKPHQDDYSSAEKFLTHFNKKCKNQTLALISSRPEGRCVAACGDFGLVMKAYFDKMESNDLSVMAAILL VDNHALTVRLRIKNTTEGCIHYVVSVYDPNVTNDKIRIMSESKEDIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPAL PKEQLLMLKGTVDEITPPLSPATMNLLMAIGQNHQLKQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVET IFNSLSEPGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNSTSSH VLYHVMANGDADMLKIVLDALSLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISA SDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVEM VYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELACELGHRVIAELIFNTLNKMAESFGFTDNPRYIAEKNYMEALLK KASPHTVR
Sequences:
>Translated_728_residues MITHIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRHNGRHIFSNKDFVIKFSISVLQAD KKEITIINKNENTTLTQTIAPIFEEYLMEILPQRSDALDKKELNLNSDRKEKEFPRVKLNGQCYFPGRPQNRIVCRHIAA QYINDIYQNVDYKPHQDDYSSAEKFLTHFNKKCKNQTLALISSRPEGRCVAACGDFGLVMKAYFDKMESNDLSVMAAILL VDNHALTVRLRIKNTTEGCIHYVVSVYDPNVTNDKIRIMSESKEDIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPAL PKEQLLMLKGTVDEITPPLSPATMNLLMAIGQNHQLKQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVET IFNSLSEPGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNSTSSH VLYHVMANGDADMLKIVLDALSLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISA SDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVEM VYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELACELGHRVIAELIFNTLNKMAESFGFTDNPRYIAEKNYMEALLK KASPHTVR >Mature_728_residues MITHIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRHNGRHIFSNKDFVIKFSISVLQAD KKEITIINKNENTTLTQTIAPIFEEYLMEILPQRSDALDKKELNLNSDRKEKEFPRVKLNGQCYFPGRPQNRIVCRHIAA QYINDIYQNVDYKPHQDDYSSAEKFLTHFNKKCKNQTLALISSRPEGRCVAACGDFGLVMKAYFDKMESNDLSVMAAILL VDNHALTVRLRIKNTTEGCIHYVVSVYDPNVTNDKIRIMSESKEDIKHYSLMDFMNVDYSLLKWSNDHVINQSVAIIPAL PKEQLLMLKGTVDEITPPLSPATMNLLMAIGQNHQLKQLMIQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVET IFNSLSEPGYEGLLSKKNLMHILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNSTSSH VLYHVMANGDADMLKIVLDALSLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSDIVKVILEALPSLAQEINISA SDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTLFNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVEM VYLALSDHARLFGFTAEDIMDFWQHKAPQKYSAFELACELGHRVIAELIFNTLNKMAESFGFTDNPRYIAEKNYMEALLK KASPHTVR
Specific function: Regulator Of Acs Synthesis. [C]
COG id: COG0666
COG function: function code R; FOG: Ankyrin repeat
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 5 ANK repeats [H]
Homologues:
Organism=Escherichia coli, GI1790447, Length=728, Percent_Identity=96.8406593406593, Blast_Score=1466, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002110 - InterPro: IPR020683 - InterPro: IPR012927 [H]
Pfam domain/function: PF07906 Toxin_15 [H]
EC number: NA
Molecular weight: Translated: 82574; Mature: 82574
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITHIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRHNGR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC HIFSNKDFVIKFSISVLQADKKEITIINKNENTTLTQTIAPIFEEYLMEILPQRSDALDK EEECCCCEEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC KELNLNSDRKEKEFPRVKLNGQCYFPGRPQNRIVCRHIAAQYINDIYQNVDYKPHQDDYS HHCCCCCCCCHHCCCCEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH SAEKFLTHFNKKCKNQTLALISSRPEGRCVAACGDFGLVMKAYFDKMESNDLSVMAAILL HHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH VDNHALTVRLRIKNTTEGCIHYVVSVYDPNVTNDKIRIMSESKEDIKHYSLMDFMNVDYS CCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCHH LLKWSNDHVINQSVAIIPALPKEQLLMLKGTVDEITPPLSPATMNLLMAIGQNHQLKQLM EEECCCCCEECCCEEEEECCCHHHEEEEECCHHHCCCCCCHHHHHHHHHHCCCCHHHHHH IQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVETIFNSLSEPGYEGLLSKKNLM HHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHH HILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNSTSSH HHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCE VLYHVMANGDADMLKIVLDALSLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSD EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEECCHHH IVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVEMVYLALSDHARLFGFTAEDIM HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHH DFWQHKAPQKYSAFELACELGHRVIAELIFNTLNKMAESFGFTDNPRYIAEKNYMEALLK HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH KASPHTVR HCCCCCCC >Mature Secondary Structure MITHIPRSSFSANINNTAQTNEHQTLSELFYKELEDKFSGKELATPLLKSFSENCRHNGR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC HIFSNKDFVIKFSISVLQADKKEITIINKNENTTLTQTIAPIFEEYLMEILPQRSDALDK EEECCCCEEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC KELNLNSDRKEKEFPRVKLNGQCYFPGRPQNRIVCRHIAAQYINDIYQNVDYKPHQDDYS HHCCCCCCCCHHCCCCEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH SAEKFLTHFNKKCKNQTLALISSRPEGRCVAACGDFGLVMKAYFDKMESNDLSVMAAILL HHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH VDNHALTVRLRIKNTTEGCIHYVVSVYDPNVTNDKIRIMSESKEDIKHYSLMDFMNVDYS CCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCHH LLKWSNDHVINQSVAIIPALPKEQLLMLKGTVDEITPPLSPATMNLLMAIGQNHQLKQLM EEECCCCCEECCCEEEEECCCHHHEEEEECCHHHCCCCCCHHHHHHHHHHCCCCHHHHHH IQLQKMPELHRTEMLTAYNSINLPGLYLAINYGNADIVETIFNSLSEPGYEGLLSKKNLM HHHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHH HILEAKDKNGFSGLFLAISRKDKNVVTSILNALPKLAATHHLDNEQVYKFLSAKNSTSSH HHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCE VLYHVMANGDADMLKIVLDALSLLIRTCHLTKEQVLDLLKAKDFYGCPGLYLAMQNGHSD EEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEECCHHH IVKVILEALPSLAQEINISASDIVDLLTAKSLARDTGLFMAMQRGHMNVINTIFNALPTL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FNTFKFDKKNMKPLLLANNSNEYPGLFSAIQHKQQNVVEMVYLALSDHARLFGFTAEDIM HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHH DFWQHKAPQKYSAFELACELGHRVIAELIFNTLNKMAESFGFTDNPRYIAEKNYMEALLK HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH KASPHTVR HCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503; 1995429; 8014990 [H]