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The map label for this gene is rsd

Identifier: 209396887

GI number: 209396887

Start: 5108270

End: 5108746

Strand: Reverse

Name: rsd

Synonym: ECH74115_5464

Alternate gene names: 209396887

Gene position: 5108746-5108270 (Counterclockwise)

Preceding gene: 209395738

Following gene: 209399239

Centisome position: 91.68

GC content: 49.27

Gene sequence:

>477_bases
ATGCTTAACCAGCTCGATAACCTGACGGAGCGCGTCAGAGGAAGTAACAAACTGGTTGATCGCTGGCTACATGTACGTAA
GCATCTGCTCGTGGCTTACTACAATCTGGTTGGCATTAAGCCTGGCAAAGAATCGTACATGAGGCTAAACGAAAAAGCCC
TTGATGATTTTTGTCAGAGCCTGGTCGATTACTTGTCTGCCGGACATTTCAGTATTTATGAGCGCATTCTTCATAAGCTG
GAAGGCAACGGGCAACTCGCGCGCGCCGCGAAGATTTGGCCGCAACTCGAAGCCAATACCCAACAGATTATGGATTACTA
CGATTCCAGCCTGGAAACCGCTATCGATCATGATAATTACCTTGAGTTTCAACAGGTTTTATCTGACATCGGCGAGGCGC
TGGAAGCGCGCTTTGTGCTGGAAGATAAGCTGATTCTGCTGGTGCTTGACGCCGCCCGCGTCAAACATCCTGCTTGA

Upstream 100 bases:

>100_bases
ATCCATAGCTCTTGCACTACCTTTGCATCACTGGCATGTTTAACATGGTTTTTACATTTCTCACTGAGCAGTTTTTGAAT
ACAAACTTGCGGAGTCAATC

Downstream 100 bases:

>100_bases
GTTCTGCGCTGTTAACGCGTAATTTACATTCAACGCCCCGTTTGTGGGGCTAATTTCTTGTCGGAGTGCCTTAACTGGCT
GAGACCGTTTATTCGGGATC

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA

Sequences:

>Translated_158_residues
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
>Mature_158_residues
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family

Homologues:

Organism=Escherichia coli, GI1790428, Length=158, Percent_Identity=100, Blast_Score=324, Evalue=1e-90,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): RSD_ECO24 (A7ZUL0)

Other databases:

- EMBL:   CP000800
- RefSeq:   YP_001465489.1
- ProteinModelPortal:   A7ZUL0
- SMR:   A7ZUL0
- STRING:   A7ZUL0
- EnsemblBacteria:   EBESCT00000018960
- GeneID:   5587886
- GenomeReviews:   CP000800_GR
- KEGG:   ecw:EcE24377A_4537
- eggNOG:   COG3160
- GeneTree:   EBGT00050000010855
- HOGENOM:   HBG416628
- OMA:   AGHFEIY
- ProtClustDB:   PRK11718
- BioCyc:   ECOL331111:ECE24377A_4537-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01181
- InterPro:   IPR007448
- PIRSF:   PIRSF016548

Pfam domain/function: PF04353 Rsd_AlgQ

EC number: NA

Molecular weight: Translated: 18243; Mature: 18243

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCH
LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHCCCCC
>Mature Secondary Structure
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCH
LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA