| Definition | Escherichia coli O157:H7 str. EC4115, complete genome. |
|---|---|
| Accession | NC_011353 |
| Length | 5,572,075 |
Click here to switch to the map view.
The map label for this gene is kpdD [H]
Identifier: 209396541
GI number: 209396541
Start: 3688586
End: 3688822
Strand: Reverse
Name: kpdD [H]
Synonym: ECH74115_3988
Alternate gene names: 209396541
Gene position: 3688822-3688586 (Counterclockwise)
Preceding gene: 209395965
Following gene: 209400235
Centisome position: 66.2
GC content: 54.43
Gene sequence:
>237_bases ATGATTTGTCCACGTTGTGCCGATGAACAGATTGAAGTGATGGCGAAATCGCCGGTGAAAGATGTCTGGACGGTATATCA GTGCCAGCATTGCCTTTATACCTGGCGCGATACCGAACCGCTGCGTCGTACCAGCCGCGAACATTATCCCGAAGCGTTCC GCATGACGCAGAAAGATATTGATGACGCGCCAATGGTGCCGAGCATCCCGCCGCTGCTGGCGGAAGGTAAGCGCTAA
Upstream 100 bases:
>100_bases CGTGGTCACTACAGCCAGCCGGTGGTGGATTTGCCGGAAACCAAAGCCTGGGCTGAAAAACTGACCGCTATGCTGGCCGC ACGTAAATAAGGAGAACAAG
Downstream 100 bases:
>100_bases TAAAAAGTGCCGGGTAGTGGCTTTGCTTTACCCGGCCTCATTACTTTATTTTATAAAATGACAGCCGCCCGCTTTTCGGC GATCCGGTATCAATATAAAT
Product: 4-hydroxybenzoate decarboxylase, subunit D
Products: NA
Alternate protein names: PAD; 4-hydroxybenzoate decarboxylase subunit D; 4-hydroxybenzoate DC; Phenylacrylic acid decarboxylase subunit D; Vanillate decarboxylase subunit D [H]
Number of amino acids: Translated: 78; Mature: 78
Protein sequence:
>78_residues MICPRCADEQIEVMAKSPVKDVWTVYQCQHCLYTWRDTEPLRRTSREHYPEAFRMTQKDIDDAPMVPSIPPLLAEGKR
Sequences:
>Translated_78_residues MICPRCADEQIEVMAKSPVKDVWTVYQCQHCLYTWRDTEPLRRTSREHYPEAFRMTQKDIDDAPMVPSIPPLLAEGKR >Mature_78_residues MICPRCADEQIEVMAKSPVKDVWTVYQCQHCLYTWRDTEPLRRTSREHYPEAFRMTQKDIDDAPMVPSIPPLLAEGKR
Specific function: Part of the BsdBCD complex involved in the decarboxylation and detoxification of phenolic derivatives under both aerobic and anaerobic conditions. It is able to catalyze the reversible decarboxylation of 4-hydroxybenzoate, vanillate and salicylate. Is not
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: =4.1.1.61 [H]
Molecular weight: Translated: 9180; Mature: 9180
Theoretical pI: Translated: 6.49; Mature: 6.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.1 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 10.3 %Cys+Met (Translated Protein) 5.1 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 10.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MICPRCADEQIEVMAKSPVKDVWTVYQCQHCLYTWRDTEPLRRTSREHYPEAFRMTQKDI CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCC DDAPMVPSIPPLLAEGKR CCCCCCCCCCCCCCCCCC >Mature Secondary Structure MICPRCADEQIEVMAKSPVKDVWTVYQCQHCLYTWRDTEPLRRTSREHYPEAFRMTQKDI CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCC DDAPMVPSIPPLLAEGKR CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969502; 9384377 [H]