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The map label for this gene is yggD [H]

Identifier: 209396295

GI number: 209396295

Start: 3919694

End: 3920203

Strand: Reverse

Name: yggD [H]

Synonym: ECH74115_4231

Alternate gene names: 209396295

Gene position: 3920203-3919694 (Counterclockwise)

Preceding gene: 209396507

Following gene: 209397256

Centisome position: 70.35

GC content: 48.43

Gene sequence:

>510_bases
ATGGCGACGCTGTCAGAAGATGATGTGCTTGAGCAACTGGATGCACAGGACAATTTATTTTCATTTATGAAAACTGCGCA
TTCTATTTTGCTCCAGGGGATACGCCAGTTTCTGCCGTCGCTGTTTGTCGATAACGATGAAGAGAGCGTCGAATATGCAG
TGAAGCCGTTACTCGCCCAAAGCGGCCCGCTTGACGATATTGATGTTGCACTGCGTTTGATTTATGCGCTGGGGAAAATG
GATAAATGGCTGTACGCCGATATCACGCATTTTTCCCAGTACTGGCATTACCTGAAAGAACAGGATGAAACGCTCGGATT
TGCCGATGACATGACTTGGGATTTTATCAGCAACGTCAATAGCATAACCTGCAATGCGACGCTCTATGACGCGTTGAAAG
CGATGAAGTTCGCCGATTTCGCCGTCTGGTCAGAGGCGCGTTTTAGCGGAATGGTCAAAACGGCGCTGACGCTGGCAGTA
ACGACCACCTTAAAGGAATTAACGCCGTGA

Upstream 100 bases:

>100_bases
GGCGAATGGAGTGCGGACGCAGACATTACTGATCGGCGGCGCGGACCAAACGTGTAATATAATAGACTCCCTGTATTGAT
GGTGATCTATCGGAAGACCA

Downstream 100 bases:

>100_bases
AAATTGAATTAACGGTGAATGGGCTGAACGTGCAAGCGCAGTACCATGATGAAGAGATAGAACGCGTGCATAAACCGTTG
CTGCGTATGCTGGCGGCCTT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MATLSEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEESVEYAVKPLLAQSGPLDDIDVALRLIYALGKM
DKWLYADITHFSQYWHYLKEQDETLGFADDMTWDFISNVNSITCNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
TTTLKELTP

Sequences:

>Translated_169_residues
MATLSEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEESVEYAVKPLLAQSGPLDDIDVALRLIYALGKM
DKWLYADITHFSQYWHYLKEQDETLGFADDMTWDFISNVNSITCNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
TTTLKELTP
>Mature_168_residues
ATLSEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEESVEYAVKPLLAQSGPLDDIDVALRLIYALGKMD
KWLYADITHFSQYWHYLKEQDETLGFADDMTWDFISNVNSITCNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAVT
TTLKELTP

Specific function: Unknown

COG id: COG3722

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli mtlR [H]

Homologues:

Organism=Escherichia coli, GI1789297, Length=169, Percent_Identity=94.6745562130178, Blast_Score=305, Evalue=1e-84,
Organism=Escherichia coli, GI1790029, Length=165, Percent_Identity=27.8787878787879, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007761 [H]

Pfam domain/function: PF05068 MtlR [H]

EC number: NA

Molecular weight: Translated: 19165; Mature: 19034

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLSEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEESVEYAVKPLLAQ
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
SGPLDDIDVALRLIYALGKMDKWLYADITHFSQYWHYLKEQDETLGFADDMTWDFISNVN
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC
SITCNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAVTTTLKELTP
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATLSEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEESVEYAVKPLLAQ
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
SGPLDDIDVALRLIYALGKMDKWLYADITHFSQYWHYLKEQDETLGFADDMTWDFISNVN
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC
SITCNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAVTTTLKELTP
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 2546007 [H]