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The map label for this gene is recO

Identifier: 209695941

GI number: 209695941

Start: 2705499

End: 2706215

Strand: Reverse

Name: recO

Synonym: VSAL_I2523

Alternate gene names: 209695941

Gene position: 2706215-2705499 (Counterclockwise)

Preceding gene: 209695942

Following gene: 209695940

Centisome position: 81.39

GC content: 41.7

Gene sequence:

>717_bases
GTGGAAGAAGGCTTACAACGTTGTTTTGTCCTGCACCGTAGACCGTATAGCGAAAGCAGTCTAATTTTAGATGTATTTAG
CGAAGAGTATGGCCGTTTATCTATTATCTCTAAAGGGGCACGCAGTAAGCGTTCAAACCTTAAAGGTGTATTACAAGCAT
TTACACCGCTATTGATGAAATGGTCGGGTAAAGGCTCAATGCGAACTTTGCGTCAAGCTGAAACTATCAGTCTGGCTATT
CCTCTCACTGGAATTAATTTATATTCAGCCTTATACATTAATGAACTAGTGGTAAGGGTGATTGAACAAGAAACCCCGTA
TCCTGCTTTATTTCTCGATTATCTCACCGCATTGACTGAACTTGCTCAGACTAAAAACCCAGAACCTGCATTAAGACGTT
TTGAATTGGCTTTACTGTCGTCATTGGGTTATGGCGTGGATTTCTTGCATTGCGCAGGCAGTGGTGAAATGGTTTCTCCT
GAAATGACGTATCGCTACAGAGAACAGAAAGGGTTCATGGCATCGATTCGACACGACCCTTTAATGAGTTTCAAAGGTGA
TGAACTTATCGCTATCAGTGAGCGTCGATTTATAACACCAGAGCAATTAAAAGCGGCAAAACGCTTTACACGTATAGCCT
TAAAGCCGTATCTTGGCGGTAAGCCCCTAAAAAGTAGGGAACTGTTTCTTCCAAGAACAAGGAGTATTCTAAAATGA

Upstream 100 bases:

>100_bases
CAAGATCCCATATAACTTAAGTAGATAAAATTATTTTAGTTATTTGGGATTTTTTTGTTGTTATCAAAGTGTATTGCGAA
CTTTATTATAGGTAATAAAT

Downstream 100 bases:

>100_bases
GTTCAATTTTACTTGGCGTCAATATCGATCACGTAGCCACTCTTCGTAATGCAAGAGGGACTAAATACCCCGATCCAGTG
CACGCTGCTGAAATTGCAGA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMKWSGKGSMRTLRQAETISLAI
PLTGINLYSALYINELVVRVIEQETPYPALFLDYLTALTELAQTKNPEPALRRFELALLSSLGYGVDFLHCAGSGEMVSP
EMTYRYREQKGFMASIRHDPLMSFKGDELIAISERRFITPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK

Sequences:

>Translated_238_residues
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMKWSGKGSMRTLRQAETISLAI
PLTGINLYSALYINELVVRVIEQETPYPALFLDYLTALTELAQTKNPEPALRRFELALLSSLGYGVDFLHCAGSGEMVSP
EMTYRYREQKGFMASIRHDPLMSFKGDELIAISERRFITPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK
>Mature_238_residues
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMKWSGKGSMRTLRQAETISLAI
PLTGINLYSALYINELVVRVIEQETPYPALFLDYLTALTELAQTKNPEPALRRFELALLSSLGYGVDFLHCAGSGEMVSP
EMTYRYREQKGFMASIRHDPLMSFKGDELIAISERRFITPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

Organism=Escherichia coli, GI2367140, Length=228, Percent_Identity=64.4736842105263, Blast_Score=293, Evalue=5e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_ALISL (B6EKM7)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263871.1
- GeneID:   6988955
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2523
- HOGENOM:   HBG645116
- OMA:   SILQPFQ
- ProtClustDB:   PRK00085
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 27083; Mature: 27083

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMK
CCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHE
WSGKGSMRTLRQAETISLAIPLTGINLYSALYINELVVRVIEQETPYPALFLDYLTALTE
ECCCCHHHHHHHHCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LAQTKNPEPALRRFELALLSSLGYGVDFLHCAGSGEMVSPEMTYRYREQKGFMASIRHDP
HHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCHHHHHHHHHCCHHHHHCCCC
LMSFKGDELIAISERRFITPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK
CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHCC
>Mature Secondary Structure
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMK
CCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHE
WSGKGSMRTLRQAETISLAIPLTGINLYSALYINELVVRVIEQETPYPALFLDYLTALTE
ECCCCHHHHHHHHCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LAQTKNPEPALRRFELALLSSLGYGVDFLHCAGSGEMVSPEMTYRYREQKGFMASIRHDP
HHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCHHHHHHHHHCCHHHHHCCCC
LMSFKGDELIAISERRFITPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK
CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA