| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is pstC [H]
Identifier: 209695562
GI number: 209695562
Start: 2270085
End: 2271011
Strand: Direct
Name: pstC [H]
Synonym: VSAL_I2119
Alternate gene names: 209695562
Gene position: 2270085-2271011 (Clockwise)
Preceding gene: 209695561
Following gene: 209695563
Centisome position: 68.27
GC content: 43.69
Gene sequence:
>927_bases ATGACCATCGCCATGAATAATCAAGATACTGTCAATCAAGACAAGCCTTCTCTTAATCCGTTACGACAGAAAAAACGTGT GGATTGGAGAGAGCGTATTTTCCACGTATTATTTCTCAGCTGTGCCATCATCGGTACGTTATCTTTAGCCACCATTGCGT ATTTTATCGTTAAAGAAAGTATTCCTGCATTTCAACAAGTTGGTGTTAGTGGCATCGTTTTAGGTCAAGATTGGCTACCA CCGGCTCTTTATGGTGTTTTCACCATGATCGTTGCATCCGTTGTTTCTACCTTTGGTGCCGTTCTCGTCGGTGTTCCAAT CGGTATCCTTACGGCTATTTTTATCGCTGAAATCGCCCCTAAACGCCTTGCCGATATTATCCGCCCAGCGGTTGAATTAC TGGCTGGCATCCCATCGGTTGTTTATGGTTTCTTTGGCCTTGTTATTATTGTTCCATTGATTCAAGACGTATTTCAAGTC CCTGCAGGTAACACTATCCTTGCGGGTATTATCGTTTTAGGTGTTATGATCTTACCTACCGTAATCACGGTATCAGAAAC CTCAATCAGAGCCGTCCCAGCGACCTATAAAGAAGGTTCATTGGCCCTTGGCGCTTCTAAAATATTCACCATTTTCCGTA TTCTTCTCCCTGCTGCTCGTTCAGGCATTATGACGGGTGTCATTTTAGGTATTGCTCGCGCACTTGGAGAAACAATGGCT ATCATTATGGTTATGGGGAACGCCCCTGCCATGCCAGAAGGTATCTTAGATTCTGCGCGTACATTAACCGCAAACATTGC GATTGAAATGTCATACGCAAGTGGCATCCATGCCAGTGCTCTATATGCAACAGGCGTAGTATTACTCGTCTTTATCATGT CTCTGAATGGCATTCTTCTTTATCTAAATCGTGAAACAGCGAGATAA
Upstream 100 bases:
>100_bases AACGGCTACATTTCAGTGAACTAATTTATTACCTTAATTTTCCTGGCCTGCAAAGGCCAGGCTTTTCCATTTCGAATTTT TCGACATGTGAGTATTTATT
Downstream 100 bases:
>100_bases GACAATGAATAAATTAAAAAAACAACGTCATATTAAAGACCAGATTGCCGCAGGATTAATTTGGTTATCTGCATCTATTA CCGTCGGTTTTCTTTTTTGG
Product: phosphate ABC transporter inner membrane component
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MTIAMNNQDTVNQDKPSLNPLRQKKRVDWRERIFHVLFLSCAIIGTLSLATIAYFIVKESIPAFQQVGVSGIVLGQDWLP PALYGVFTMIVASVVSTFGAVLVGVPIGILTAIFIAEIAPKRLADIIRPAVELLAGIPSVVYGFFGLVIIVPLIQDVFQV PAGNTILAGIIVLGVMILPTVITVSETSIRAVPATYKEGSLALGASKIFTIFRILLPAARSGIMTGVILGIARALGETMA IIMVMGNAPAMPEGILDSARTLTANIAIEMSYASGIHASALYATGVVLLVFIMSLNGILLYLNRETAR
Sequences:
>Translated_308_residues MTIAMNNQDTVNQDKPSLNPLRQKKRVDWRERIFHVLFLSCAIIGTLSLATIAYFIVKESIPAFQQVGVSGIVLGQDWLP PALYGVFTMIVASVVSTFGAVLVGVPIGILTAIFIAEIAPKRLADIIRPAVELLAGIPSVVYGFFGLVIIVPLIQDVFQV PAGNTILAGIIVLGVMILPTVITVSETSIRAVPATYKEGSLALGASKIFTIFRILLPAARSGIMTGVILGIARALGETMA IIMVMGNAPAMPEGILDSARTLTANIAIEMSYASGIHASALYATGVVLLVFIMSLNGILLYLNRETAR >Mature_307_residues TIAMNNQDTVNQDKPSLNPLRQKKRVDWRERIFHVLFLSCAIIGTLSLATIAYFIVKESIPAFQQVGVSGIVLGQDWLPP ALYGVFTMIVASVVSTFGAVLVGVPIGILTAIFIAEIAPKRLADIIRPAVELLAGIPSVVYGFFGLVIIVPLIQDVFQVP AGNTILAGIIVLGVMILPTVITVSETSIRAVPATYKEGSLALGASKIFTIFRILLPAARSGIMTGVILGIARALGETMAI IMVMGNAPAMPEGILDSARTLTANIAIEMSYASGIHASALYATGVVLLVFIMSLNGILLYLNRETAR
Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0573
COG function: function code P; ABC-type phosphate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790164, Length=303, Percent_Identity=33.993399339934, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1790163, Length=140, Percent_Identity=37.8571428571429, Blast_Score=82, Evalue=6e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011864 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 32747; Mature: 32616
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIAMNNQDTVNQDKPSLNPLRQKKRVDWRERIFHVLFLSCAIIGTLSLATIAYFIVKES CEEECCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IPAFQQVGVSGIVLGQDWLPPALYGVFTMIVASVVSTFGAVLVGVPIGILTAIFIAEIAP CCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH KRLADIIRPAVELLAGIPSVVYGFFGLVIIVPLIQDVFQVPAGNTILAGIIVLGVMILPT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH VITVSETSIRAVPATYKEGSLALGASKIFTIFRILLPAARSGIMTGVILGIARALGETMA HHHCCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE IIMVMGNAPAMPEGILDSARTLTANIAIEMSYASGIHASALYATGVVLLVFIMSLNGILL EEEEECCCCCCCHHHHHHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEE YLNRETAR EEECCCCC >Mature Secondary Structure TIAMNNQDTVNQDKPSLNPLRQKKRVDWRERIFHVLFLSCAIIGTLSLATIAYFIVKES EEECCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IPAFQQVGVSGIVLGQDWLPPALYGVFTMIVASVVSTFGAVLVGVPIGILTAIFIAEIAP CCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH KRLADIIRPAVELLAGIPSVVYGFFGLVIIVPLIQDVFQVPAGNTILAGIIVLGVMILPT HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH VITVSETSIRAVPATYKEGSLALGASKIFTIFRILLPAARSGIMTGVILGIARALGETMA HHHCCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE IIMVMGNAPAMPEGILDSARTLTANIAIEMSYASGIHASALYATGVVLLVFIMSLNGILL EEEEECCCCCCCHHHHHHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEE YLNRETAR EEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]