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The map label for this gene is ccmF [H]

Identifier: 209695458

GI number: 209695458

Start: 2142795

End: 2144681

Strand: Direct

Name: ccmF [H]

Synonym: VSAL_I2001

Alternate gene names: 209695458

Gene position: 2142795-2144681 (Clockwise)

Preceding gene: 209695457

Following gene: 209695459

Centisome position: 64.44

GC content: 40.12

Gene sequence:

>1887_bases
ATGGTTGCTGAAATAGGTCAGTTCTGGTTAATAGCAACGATGGTGCTGTCTGTTGTGGGTGTTATTTCTACCAGCTACGG
AATCGTGAAAGGGAATATCTTGTGGCAAATGTCGATATTGCCACTTTCTCTGCTCAGTTGTATTTTTTGTTTGTTGTCTA
TTTCTGCATTAGGTTATGGGTTTTACATCGATGATTTTTCTATTCGATATATTGCCGAGCATTCTAATTCTGATTTACCT
GTCTTTTTTAAAGTGGCCGCGATTTGGGGAGGGCATGAAGGGTCATTATTGTTCTGGGTATTAACCTTAACGTTATGGGC
AGGTGTCATAACTCTTAATCGAAAAACCATACAAACAGAATACGTTATTCGAGTTTTGTTGGTGCTTAATGCGTTAATTG
CTATTTTTTCAGCCTTTACTTTATTTGCTTCAAATCCTTTCATTATTTACGTTAACACACCATTAGAAGGTCGAGATTTG
AATCCAATGTTGCAAGATATTGGATTGATATTTCACCCACCATTATTGTATTTAGGCTACGTCGGATTTGCCGCGACATT
TTCATTTGCACTTGCTGCGTTGATGATGAAAGACGTACCGCAATATTGGGTTAAACACGCAAGGCATTGGACACTATTAG
CGTGGTCATTGTTGACCGCAGGGATCAGTTTAGGATCGTGGTGGGCATATTATGAGCTCGGTTGGGGCGGTTGGTGGTTT
TGGGATCCGGTTGAAAACGCCTCTTTGTTGCCTTGGTTAACCGCAACGGGTTTACTGCATACCTTAATCGCGAGTGATAA
GAAAAACCAACTTTTAAAAACGTCGATGATTCTGTCGTTAGTGACATTTTGTTTGAGTATTTTAGGGACGTTTGTTGTTC
GCTCTGGGGTATTAACTTCGGTTCATGCCTTTGCGGTGGACCCAACTCGTGGGATCATTCTTCTTCTGATCTTGTTTGTG
GTTATGCTGGCCTCTTTGTCTCTGTATGCATTCAAAAGTAGACAGTTAAATAGCCAACCTATTCGTCATTTTATCAGTCG
TGATTTTCTATTTTTATTGCTCGCAGGTTTATTTTCAATCGCAACAATCACGGTATTACTTGGCACATTTTATCCTATGA
TTTTCCAAATTTTCGGATTAGGAAATATCTCCGTTGGAGCGCCTTATTTTAATCTGTTATTTGTGCCAATGGCGATTGTT
GCTTTGTTCATGATCGCCGTGTCGGTCTTTGTTCGTTGGGAAGGAAAAGCGACAAATGCAAATACCAAGAAGATCGTTAT
TTCAAGCTTGATTTCTATTGTGCTAGGGCTAGGAATATATCGTGTTCAATATGAAAATATCGCAGTAATTCCTAGCTTGG
TTTGGGTGTTAGCTTTCGCTGTAGTAATGGGGTCTATTTGGTCGCTGATACAGTCCAAAGGCAAAGCGATAGGAATGGTT
ATCGCTCATATTGGTATTGCGATAGTGATGATTGGTGCAGCGATGAATAGTGAACACTCTTTTGAAAGCAGTGCGAAAAT
GGAACCGAGCATAACCGCTAAATTAGCCGATTATGAGATCACTTATAAAGAAACCGAGCTGTTGGTTGCTTCAAATTACA
CCGCAGAACAGGCAAATCTATTGATACGTGAAAATGGCAAAGAAATAGCCATGGTCCAGCCGCAGCGTCGTCATTATCAA
GTTCGTGTAATGAACATGAGTGAGCCTGCAATGTATTGGTTTTGGCATGGTGACATATACGTGACGTTAGGCGAAAAATT
AAAAGACGGCAGTTTCGCATTACGTTTACAATATAAAGCGTATGTACGATGGATTTGGTTTGGGTCTATTTTGATGGCGC
TTGGTGGTGTATTAGCTATGGTAAAAAGAAAGAGTAATTATTCATGA

Upstream 100 bases:

>100_bases
TATGCTGGACAAATGACCGTCGTATAATGAAGTGTCGCGATGCTGTTTTTATAAGCAGCATCGTGACTATTAACGAATAA
AAATACATGCGTGGAGCATT

Downstream 100 bases:

>100_bases
AATCAACAATAAAAATAGGGATCGCCGTTGGTGTATGTGCGATTGTCTTTATCTTGTTACTGACAGGATTAGAAACAAAA
GAATCGACAACATCAACCGC

Product: cytochrome C biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 628; Mature: 628

Protein sequence:

>628_residues
MVAEIGQFWLIATMVLSVVGVISTSYGIVKGNILWQMSILPLSLLSCIFCLLSISALGYGFYIDDFSIRYIAEHSNSDLP
VFFKVAAIWGGHEGSLLFWVLTLTLWAGVITLNRKTIQTEYVIRVLLVLNALIAIFSAFTLFASNPFIIYVNTPLEGRDL
NPMLQDIGLIFHPPLLYLGYVGFAATFSFALAALMMKDVPQYWVKHARHWTLLAWSLLTAGISLGSWWAYYELGWGGWWF
WDPVENASLLPWLTATGLLHTLIASDKKNQLLKTSMILSLVTFCLSILGTFVVRSGVLTSVHAFAVDPTRGIILLLILFV
VMLASLSLYAFKSRQLNSQPIRHFISRDFLFLLLAGLFSIATITVLLGTFYPMIFQIFGLGNISVGAPYFNLLFVPMAIV
ALFMIAVSVFVRWEGKATNANTKKIVISSLISIVLGLGIYRVQYENIAVIPSLVWVLAFAVVMGSIWSLIQSKGKAIGMV
IAHIGIAIVMIGAAMNSEHSFESSAKMEPSITAKLADYEITYKETELLVASNYTAEQANLLIRENGKEIAMVQPQRRHYQ
VRVMNMSEPAMYWFWHGDIYVTLGEKLKDGSFALRLQYKAYVRWIWFGSILMALGGVLAMVKRKSNYS

Sequences:

>Translated_628_residues
MVAEIGQFWLIATMVLSVVGVISTSYGIVKGNILWQMSILPLSLLSCIFCLLSISALGYGFYIDDFSIRYIAEHSNSDLP
VFFKVAAIWGGHEGSLLFWVLTLTLWAGVITLNRKTIQTEYVIRVLLVLNALIAIFSAFTLFASNPFIIYVNTPLEGRDL
NPMLQDIGLIFHPPLLYLGYVGFAATFSFALAALMMKDVPQYWVKHARHWTLLAWSLLTAGISLGSWWAYYELGWGGWWF
WDPVENASLLPWLTATGLLHTLIASDKKNQLLKTSMILSLVTFCLSILGTFVVRSGVLTSVHAFAVDPTRGIILLLILFV
VMLASLSLYAFKSRQLNSQPIRHFISRDFLFLLLAGLFSIATITVLLGTFYPMIFQIFGLGNISVGAPYFNLLFVPMAIV
ALFMIAVSVFVRWEGKATNANTKKIVISSLISIVLGLGIYRVQYENIAVIPSLVWVLAFAVVMGSIWSLIQSKGKAIGMV
IAHIGIAIVMIGAAMNSEHSFESSAKMEPSITAKLADYEITYKETELLVASNYTAEQANLLIRENGKEIAMVQPQRRHYQ
VRVMNMSEPAMYWFWHGDIYVTLGEKLKDGSFALRLQYKAYVRWIWFGSILMALGGVLAMVKRKSNYS
>Mature_628_residues
MVAEIGQFWLIATMVLSVVGVISTSYGIVKGNILWQMSILPLSLLSCIFCLLSISALGYGFYIDDFSIRYIAEHSNSDLP
VFFKVAAIWGGHEGSLLFWVLTLTLWAGVITLNRKTIQTEYVIRVLLVLNALIAIFSAFTLFASNPFIIYVNTPLEGRDL
NPMLQDIGLIFHPPLLYLGYVGFAATFSFALAALMMKDVPQYWVKHARHWTLLAWSLLTAGISLGSWWAYYELGWGGWWF
WDPVENASLLPWLTATGLLHTLIASDKKNQLLKTSMILSLVTFCLSILGTFVVRSGVLTSVHAFAVDPTRGIILLLILFV
VMLASLSLYAFKSRQLNSQPIRHFISRDFLFLLLAGLFSIATITVLLGTFYPMIFQIFGLGNISVGAPYFNLLFVPMAIV
ALFMIAVSVFVRWEGKATNANTKKIVISSLISIVLGLGIYRVQYENIAVIPSLVWVLAFAVVMGSIWSLIQSKGKAIGMV
IAHIGIAIVMIGAAMNSEHSFESSAKMEPSITAKLADYEITYKETELLVASNYTAEQANLLIRENGKEIAMVQPQRRHYQ
VRVMNMSEPAMYWFWHGDIYVTLGEKLKDGSFALRLQYKAYVRWIWFGSILMALGGVLAMVKRKSNYS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=640, Percent_Identity=36.875, Blast_Score=428, Evalue=1e-121,
Organism=Escherichia coli, GI1790511, Length=572, Percent_Identity=39.6853146853147, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568
- InterPro:   IPR003570
- InterPro:   IPR017563 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70181; Mature: 70181

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAEIGQFWLIATMVLSVVGVISTSYGIVKGNILWQMSILPLSLLSCIFCLLSISALGYG
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEHHHHHHHHHHHHHHHHHHHHCCE
FYIDDFSIRYIAEHSNSDLPVFFKVAAIWGGHEGSLLFWVLTLTLWAGVITLNRKTIQTE
EEEECCEEEEEEECCCCCCCEEEEEEEHCCCCCCCHHHHHHHHHHHHHHHEECCHHHHHH
YVIRVLLVLNALIAIFSAFTLFASNPFIIYVNTPLEGRDLNPMLQDIGLIFHPPLLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFAATFSFALAALMMKDVPQYWVKHARHWTLLAWSLLTAGISLGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE
WDPVENASLLPWLTATGLLHTLIASDKKNQLLKTSMILSLVTFCLSILGTFVVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHAFAVDPTRGIILLLILFVVMLASLSLYAFKSRQLNSQPIRHFISRDFLFLLLAGLFSI
HHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATITVLLGTFYPMIFQIFGLGNISVGAPYFNLLFVPMAIVALFMIAVSVFVRWEGKATNA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
NTKKIVISSLISIVLGLGIYRVQYENIAVIPSLVWVLAFAVVMGSIWSLIQSKGKAIGMV
CHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
IAHIGIAIVMIGAAMNSEHSFESSAKMEPSITAKLADYEITYKETELLVASNYTAEQANL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECEEEEEEHEEEEEECCCCHHHHCE
LIRENGKEIAMVQPQRRHYQVRVMNMSEPAMYWFWHGDIYVTLGEKLKDGSFALRLQYKA
EEEECCCEEEEECCCCCCEEEEEEECCCCEEEEEEECEEEEEECCCCCCCCEEEEEEHHH
YVRWIWFGSILMALGGVLAMVKRKSNYS
HHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVAEIGQFWLIATMVLSVVGVISTSYGIVKGNILWQMSILPLSLLSCIFCLLSISALGYG
CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEHHHHHHHHHHHHHHHHHHHHCCE
FYIDDFSIRYIAEHSNSDLPVFFKVAAIWGGHEGSLLFWVLTLTLWAGVITLNRKTIQTE
EEEECCEEEEEEECCCCCCCEEEEEEEHCCCCCCCHHHHHHHHHHHHHHHEECCHHHHHH
YVIRVLLVLNALIAIFSAFTLFASNPFIIYVNTPLEGRDLNPMLQDIGLIFHPPLLYLGY
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFAATFSFALAALMMKDVPQYWVKHARHWTLLAWSLLTAGISLGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE
WDPVENASLLPWLTATGLLHTLIASDKKNQLLKTSMILSLVTFCLSILGTFVVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
VHAFAVDPTRGIILLLILFVVMLASLSLYAFKSRQLNSQPIRHFISRDFLFLLLAGLFSI
HHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ATITVLLGTFYPMIFQIFGLGNISVGAPYFNLLFVPMAIVALFMIAVSVFVRWEGKATNA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
NTKKIVISSLISIVLGLGIYRVQYENIAVIPSLVWVLAFAVVMGSIWSLIQSKGKAIGMV
CHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
IAHIGIAIVMIGAAMNSEHSFESSAKMEPSITAKLADYEITYKETELLVASNYTAEQANL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECEEEEEEHEEEEEECCCCHHHHCE
LIRENGKEIAMVQPQRRHYQVRVMNMSEPAMYWFWHGDIYVTLGEKLKDGSFALRLQYKA
EEEECCCEEEEECCCCCCEEEEEEECCCCEEEEEEECEEEEEECCCCCCCCEEEEEEHHH
YVRWIWFGSILMALGGVLAMVKRKSNYS
HHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]