| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695385
Identifier: 209695385
GI number: 209695385
Start: 2052717
End: 2053427
Strand: Direct
Name: 209695385
Synonym: VSAL_I1919
Alternate gene names: NA
Gene position: 2052717-2053427 (Clockwise)
Preceding gene: 209695381
Following gene: 209695391
Centisome position: 61.73
GC content: 36.15
Gene sequence:
>711_bases TTGCTATTGTCATTTGAGAGGCAGAATATTGGAGCTTGTAAATTACGTCATATTCCTATCAACCGTATTAGAGGTAGCCT TTTGAATCACATTATCCGCCAGATCTTTGAACCTAAAAAAATAATGCTTTATTTTGTTTTTGCATTTATTCCTGCAATCT TATTTTATGCACTTTCACTTGTTGGATTGCATCAGGCACTTGGATTTACACCAATGCAGGTCTTGCGTGATTTAGCGCAA CAAACAGAAGTACATAGCTTTTTAGGTTTTCTTTCTAATATTGGAGTCTGGTTTTGGATTTCCTCACTCGCGGTTGCTTA TTTCAGTGCTATTTATCTACACAGTGGCAAACACAGAAGGTTGTTGATATTAATGGGAATGCTGGCATCTATCTTAGCGG TAGATGATTTCTTCTTGATTCATGATCGTTATGTAAATCAATATATCTGTTATTTCTTTTATGTGGTGGTGGCATTAGCG CTATTGGCTTTTCATTTTAAAGATATTGTTGAAATCGATGGATTTGCATTTTTAGTTGCTGGAGGATTACTTGCGGGTTC TATCGCTACAGATGTCATTCAAGGGTATTTGCCGTTTGGTTATGAAGTGACTCAAGTATTTGAAGAAGGCTGTAAATTTA TTGGTGCAGCTTCATGGTTATATTTTACTTGTACTGCTGCATCTTATGGTTGCAAGAGAGTAGAGAAGTAA
Upstream 100 bases:
>100_bases GTTATGTTTTTATTATGTATTAATAAATTTAATCTAAATTATCAAGACGTAAAGATAACCTCTATTTTAATTTGGTCTTA ATTTTAAGAGGGCAGCGGCG
Downstream 100 bases:
>100_bases TTGGTAAAGGGGCACTATTTATTATTTAAATAGTGCCCCATTTATTTATCGAGAACGTCGTTTTTCTAATTGTTGGTTGA CGATTAAAGCGATGAGAATT
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 236; Mature: 236
Protein sequence:
>236_residues MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSLVGLHQALGFTPMQVLRDLAQ QTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRRLLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALA LLAFHFKDIVEIDGFAFLVAGGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK
Sequences:
>Translated_236_residues MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSLVGLHQALGFTPMQVLRDLAQ QTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRRLLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALA LLAFHFKDIVEIDGFAFLVAGGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK >Mature_236_residues MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSLVGLHQALGFTPMQVLRDLAQ QTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRRLLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALA LLAFHFKDIVEIDGFAFLVAGGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26779; Mature: 26779
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSL CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH VGLHQALGFTPMQVLRDLAQQTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRR HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH LLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALALLAFHFKDIVEIDGFAFLVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH GGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLLSFERQNIGACKLRHIPINRIRGSLLNHIIRQIFEPKKIMLYFVFAFIPAILFYALSL CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH VGLHQALGFTPMQVLRDLAQQTEVHSFLGFLSNIGVWFWISSLAVAYFSAIYLHSGKHRR HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH LLILMGMLASILAVDDFFLIHDRYVNQYICYFFYVVVALALLAFHFKDIVEIDGFAFLVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH GGLLAGSIATDVIQGYLPFGYEVTQVFEEGCKFIGAASWLYFTCTAASYGCKRVEK HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA