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The map label for this gene is pal [H]

Identifier: 209695366

GI number: 209695366

Start: 2032865

End: 2033422

Strand: Direct

Name: pal [H]

Synonym: VSAL_I1899

Alternate gene names: 209695366

Gene position: 2032865-2033422 (Clockwise)

Preceding gene: 209695365

Following gene: 209695367

Centisome position: 61.14

GC content: 42.47

Gene sequence:

>558_bases
ATGCAACTAAATAAACTTCTTAAGAGTCTTTTAATCGCGCTGCCAGTGGTTGCTCTTTCTGCTTGTAGTTCTAGCGATAG
CGCAACTGATAGTACTGCTGGTCAAGAATCAACAAACGGAACAGAAACAACAAGCGGTACTGCTGGTGAAGGCCAAACAG
ATACAACGGTTGTTACTGTAGTTGAAGGTGAAGAAGTTCTAACTGAGCAAGAAGTTAAAGAACAAGCTTTACGTCAAGTT
CAGACTGTTTACTTCGCTTTTGATAACTCAACTATTTCTTCAGAGTATGAAGATATGCTTGCAGCTCACGCGGCTTTCTT
AAGCAAAGCGCCTGAAGTTAAAGTAACCGTTGAAGGCCATGCTGACGAACGTGGTACTCCTGAGTACAACATCGCACTAG
GCGAACGTCGTGCTAATGCAGTTGCTAAATACCTACAAGCTTTAGGTGTTTCTGCAGACCAAATCTCTATCGTAAGCTAC
GGTGAAGAAAAACCTCTAGTTCTTGGCCAAACAGCTGAAGACTACGCTAAAAACCGTCGTGCAGTATTAGTATACTAA

Upstream 100 bases:

>100_bases
GTTTTAAAGCTCGCTTACCAGCGACAAACGGACGTGTAAGGGCACCAGCGTGGTCGCCATTTTTATAGCTACTAAATATT
TAGGAAATAAGGAAAATATA

Downstream 100 bases:

>100_bases
TCGATAGTTTATAAGGCAGCTTATATGAAATACAGTAACCTTAAGCGAATTATTCCGCTTACGTTGCTGGCGAGTGCGGC
GACCCTTGTGGTCGCCGCTC

Product: peptidoglycan-associated lipoprotein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNGTETTSGTAGEGQTDTTVVTVVEGEEVLTEQEVKEQALRQV
QTVYFAFDNSTISSEYEDMLAAHAAFLSKAPEVKVTVEGHADERGTPEYNIALGERRANAVAKYLQALGVSADQISIVSY
GEEKPLVLGQTAEDYAKNRRAVLVY

Sequences:

>Translated_185_residues
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNGTETTSGTAGEGQTDTTVVTVVEGEEVLTEQEVKEQALRQV
QTVYFAFDNSTISSEYEDMLAAHAAFLSKAPEVKVTVEGHADERGTPEYNIALGERRANAVAKYLQALGVSADQISIVSY
GEEKPLVLGQTAEDYAKNRRAVLVY
>Mature_185_residues
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNGTETTSGTAGEGQTDTTVVTVVEGEEVLTEQEVKEQALRQV
QTVYFAFDNSTISSEYEDMLAAHAAFLSKAPEVKVTVEGHADERGTPEYNIALGERRANAVAKYLQALGVSADQISIVSY
GEEKPLVLGQTAEDYAKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=185, Percent_Identity=55.6756756756757, Blast_Score=181, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19737; Mature: 19737

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00211 ABC_TRANSPORTER_1 ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNGTETTSGTAGEGQTDTTVVTV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
VEGEEVLTEQEVKEQALRQVQTVYFAFDNSTISSEYEDMLAAHAAFLSKAPEVKVTVEGH
ECCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
ADERGTPEYNIALGERRANAVAKYLQALGVSADQISIVSYGEEKPLVLGQTAEDYAKNRR
CCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCHHHHHCCCC
AVLVY
EEEEC
>Mature Secondary Structure
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNGTETTSGTAGEGQTDTTVVTV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
VEGEEVLTEQEVKEQALRQVQTVYFAFDNSTISSEYEDMLAAHAAFLSKAPEVKVTVEGH
ECCHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
ADERGTPEYNIALGERRANAVAKYLQALGVSADQISIVSYGEEKPLVLGQTAEDYAKNRR
CCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCHHHHHCCCC
AVLVY
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]