| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695253
Identifier: 209695253
GI number: 209695253
Start: 1892637
End: 1893551
Strand: Direct
Name: 209695253
Synonym: VSAL_I1775
Alternate gene names: NA
Gene position: 1892637-1893551 (Clockwise)
Preceding gene: 209695252
Following gene: 209695256
Centisome position: 56.92
GC content: 40.77
Gene sequence:
>915_bases GTGAAAAAACAAGCAATAGCCAGTTTGCTTTTAGGGTGCACTGCGTCAACACAAGCATTTGCACTTGATACTAACAGCGC TTATGACATCGATTATAAAAGTGATTGTTCTAGCAACATTTATTCAAGCTATTGCTCTGCGGCTTCATTTGATTTCTCCC CTGTACGGTTAGCGGGTGATGTGACGCCATCAAAAAAAGCGGATAATAACGATTTCGCGACAGAACAAGTCCCCCATTAT CTACGCGTATCTGATCAACGAGATTGGGATTACTTACTCGCGCAATCCTATACAATCCTTGGCTTAAGTGTTGCCACTGT TGGTTTAATGACATTTCTACCAGAAAGTATCACTAAATGGGATTCTGAAGATTCAAGTCTTAAAGGTCTTGGCTCTAAAT GGAAAGATAATGTCACAGCGGGTCCTGTTTGGGATAAAGATGAGCATTTCTTAAACTATGTAATGCACCCTTATTTTGGT GGTGTGTACTATACCGCAGCTCGACATGCCGGTTTTAATGAATTTGAATCGTTCCTATACTCAACAACGATGTCTACTTT TTTCTGGGAATATGGTGTAGAAGCATTTGCTGAAGTCCCATCAATTCAAGATTTATTTGTAACGCCTTTCTTTGGTGCCG TTGTTGGTGAGCTAATGCTGCAACAAGAGCTTAGTATCACGGCAAATGGTGGCGAAGTATTAGGATCAGACACATTAGGT AGCGTCAGCTTATTCTTCTTAAACCCAGTGGGTCATATTCATTATTGGGTAACCGATGCATGGGGTGGAGATACTGAAGT TAACCTTGCTTATAATGCTTGGTTTAGTAATGGTGATGCGGCACAATTTGCTTATGATGCAGGCATGCCTTACACCGACC AATTTGTCGGCCTTGAAGTTAAATTAAAATTCTAA
Upstream 100 bases:
>100_bases ACTCGTTTTTATGAGTGTTTTTACTTTTATGTTTTGCATTTTATCTCTAATAGTAGATAATTGTGACCTAGCTCGTATTT AATATAGTTAAGGACTTTCA
Downstream 100 bases:
>100_bases GCGTATAGACACTAAAAAAAAGACATCCTAAGCGGTAATGCCGTTCACTTAAGGGTGAATGGCATTCTTGTTTCTGGCAT ATCGTTGAGGTCTTGGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGDVTPSKKADNNDFATEQVPHY LRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKWDSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFG GVYYTAARHAGFNEFESFLYSTTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEVKLKF
Sequences:
>Translated_304_residues MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGDVTPSKKADNNDFATEQVPHY LRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKWDSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFG GVYYTAARHAGFNEFESFLYSTTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEVKLKF >Mature_304_residues MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGDVTPSKKADNNDFATEQVPHY LRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKWDSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFG GVYYTAARHAGFNEFESFLYSTTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEVKLKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33670; Mature: 33670
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGD CCHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECC VTPSKKADNNDFATEQVPHYLRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKW CCCCCCCCCCCCCHHHCCCEEEECCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHC DSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFGGVYYTAARHAGFNEFESFLY CCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHH STTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCEEECCCCCC SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEV CEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCEEEEEE KLKF EEEC >Mature Secondary Structure MKKQAIASLLLGCTASTQAFALDTNSAYDIDYKSDCSSNIYSSYCSAASFDFSPVRLAGD CCHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECC VTPSKKADNNDFATEQVPHYLRVSDQRDWDYLLAQSYTILGLSVATVGLMTFLPESITKW CCCCCCCCCCCCCHHHCCCEEEECCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHC DSEDSSLKGLGSKWKDNVTAGPVWDKDEHFLNYVMHPYFGGVYYTAARHAGFNEFESFLY CCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHH STTMSTFFWEYGVEAFAEVPSIQDLFVTPFFGAVVGELMLQQELSITANGGEVLGSDTLG HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEECCCEEECCCCCC SVSLFFLNPVGHIHYWVTDAWGGDTEVNLAYNAWFSNGDAAQFAYDAGMPYTDQFVGLEV CEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCEEEEEE KLKF EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA