Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695130
Identifier: 209695130
GI number: 209695130
Start: 1734710
End: 1735324
Strand: Direct
Name: 209695130
Synonym: VSAL_I1630
Alternate gene names: NA
Gene position: 1734710-1735324 (Clockwise)
Preceding gene: 209695129
Following gene: 209695131
Centisome position: 52.17
GC content: 36.26
Gene sequence:
>615_bases ATGAACGAAACTAAAATTATAATTATGGCTAAAACCCCGGTTGCTGGTATGGCAAAAACACGTTTAATTCCTTCAATAGG AATGGAAAACTCAGGGCGTTTAGCCAAAATGTTATTTCGACATACTATAAATGAAGCGATTTCATCAGATATAGGTCCAA TAGAATTATGCGTAACACCTAGTCTAAATTCATCTTGTTGGAAACTATTTTCAATTCCACCAACAGTAACATGGAGCCTT CAAAGAGAAGGAAATCTAGGAGAGCGCCTAACCTCTGTTTCAAGAAAGGCAACTCATGATTATTCAACATACGTAATAAT TGGGACAGATTGCCCTGCTCTAACACGTGATATTTTACAATCTGCAGCTCATTCATTACACAATTCAGATTCATGTCTAG TTCCAGTCAGTGATGGTGGTTACTCTTTACTTGGATTAACTAAGCATCATGATTCACTTTTTAATAATATCCCCTGGAGT ACTAATCAAGTTTACGCACTAACTGAGCAACGAATAAAGTCCCTCAACTGGTCAGTAACTAAGCTTAAAGAATTACATGA TATTGACATTATTGATGATCTAAAGTGGCTACCAAAGAGCTGGGGTTTTAACTAA
Upstream 100 bases:
>100_bases GGGAAAACAATGGAGTTTGGAACACGATATTTCTGATGTGGAAGCTCCGTCTACTCTATTGGCTAGGCTCATCAGCAAAA TCTCTCGCAAAGGAATATAG
Downstream 100 bases:
>100_bases TTCTATCAAATAACCATTGCTAAAATACAAAGGGAATTTTATGTTTAATATCCATATCGGTTATTTAACCATTATCTTAT CAATTATTGCACTCATTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 204; Mature: 204
Protein sequence:
>204_residues MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTPSLNSSCWKLFSIPPTVTWSL QREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQSAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWS TNQVYALTEQRIKSLNWSVTKLKELHDIDIIDDLKWLPKSWGFN
Sequences:
>Translated_204_residues MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTPSLNSSCWKLFSIPPTVTWSL QREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQSAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWS TNQVYALTEQRIKSLNWSVTKLKELHDIDIIDDLKWLPKSWGFN >Mature_204_residues MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTPSLNSSCWKLFSIPPTVTWSL QREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQSAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWS TNQVYALTEQRIKSLNWSVTKLKELHDIDIIDDLKWLPKSWGFN
Specific function: Unknown
COG id: COG3222
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22721; Mature: 22721
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTP CCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC SLNSSCWKLFSIPPTVTWSLQREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQ CCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH SAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWSTNQVYALTEQRIKSLNWSVT HHHHHHCCCCCEEEEECCCCEEEEEEEHHHHHHHHCCCCCCCEEEEEHHHHHHHCCCHHH KLKELHDIDIIDDLKWLPKSWGFN HHHHHHCCCHHHHHHHCCCCCCCC >Mature Secondary Structure MNETKIIIMAKTPVAGMAKTRLIPSIGMENSGRLAKMLFRHTINEAISSDIGPIELCVTP CCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC SLNSSCWKLFSIPPTVTWSLQREGNLGERLTSVSRKATHDYSTYVIIGTDCPALTRDILQ CCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH SAAHSLHNSDSCLVPVSDGGYSLLGLTKHHDSLFNNIPWSTNQVYALTEQRIKSLNWSVT HHHHHHCCCCCEEEEECCCCEEEEEEEHHHHHHHHCCCCCCCEEEEEHHHHHHHCCCHHH KLKELHDIDIIDDLKWLPKSWGFN HHHHHHCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA