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The map label for this gene is yafC [C]

Identifier: 209695089

GI number: 209695089

Start: 1696300

End: 1697211

Strand: Direct

Name: yafC [C]

Synonym: VSAL_I1586

Alternate gene names: 209695089

Gene position: 1696300-1697211 (Clockwise)

Preceding gene: 209695087

Following gene: 209695090

Centisome position: 51.01

GC content: 37.83

Gene sequence:

>912_bases
ATGTTAAAGCAAGCCAAACAAATGATTGTGTTCAACGCACTACATCAACAACAAAGCTTTACTAAAGCTGCTCAACTTCT
CGAAATATCTAGAACTCAGGTAAGTAAACAGATCCAGTTGCTTGAAGAACGCTTAGGAGTTCAATTAGTGCAACGAACCA
CTCGTTCTTTTTCTCTTACCGAAGCGGGTCAATCTTTTGCCGTCCATTGCGCGAATATTGCCGATGAAATCAATGAAGCA
GAAAATGAACTGCTTTCTAATGTAGACAATCTACAAGGAAAACTACGAGTCGGTATTGCTCAGTCATTCGCAACCAATCA
TATTTTGCCTTATCTGTCAGAGCTTCATCAGCGCTACCCTTTATTGAATGTTGAAATTACCTTGTTTGATCATAAAATTG
ATGTCATCGCAGAGCAATTAGACTTATGGATAGGAGTCATGGACTCTCCTCCTGAAGGATTTGTTGCTCGTCACTTAATT
GATTGTCATTTTGTTTTAGTTGCTAGCCCTTCTTACCTTTCGATACAAGGGATCCCTTATCATCCTTATGATTTAAAAAA
GCATAATTGTTTAACTTATGTGAGCCGAGAACGTAAAGACAATGTATGGGGGTTTCATAAAGATAACGATAATCTACAAA
TTAAAGTCTCAGGGAATTATCGCATTGATTCAGCTGATGCGATTCGGAATGCAACAATTGCAGGAAGTGGAATTGGTTAC
GTTGCAACGTATTTACTGTCTGATGAATTGCGTACCGGTAAGCTGATCCAACTCTTACCCGATTGGGAATTAAATCAGTC
GATGCCGTTATATGCCGTTTACCCTCGTCGTAAATTCTTACCTAAAAAAGTCCATGTTTTTATGGAATTTGTTCGTCAGC
ATATTAATTCAGAGAAAATTGATAATATATAA

Upstream 100 bases:

>100_bases
TAAGGGCATCTAAAAACAAAATCATAACTCACTTTATTCAATTGCATTGAACACTTACAATTAGTCAAACGTTGGTCAAT
TACCATTAATCGAGACGCTC

Downstream 100 bases:

>100_bases
ACGACGAAACATGCAATTATTAGGGATAATATTCAGCCTTATTATCCCGTATAGTAACAACTGACTCTTATATATGTGAT
AAAACTCTCAATTATTACCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MLKQAKQMIVFNALHQQQSFTKAAQLLEISRTQVSKQIQLLEERLGVQLVQRTTRSFSLTEAGQSFAVHCANIADEINEA
ENELLSNVDNLQGKLRVGIAQSFATNHILPYLSELHQRYPLLNVEITLFDHKIDVIAEQLDLWIGVMDSPPEGFVARHLI
DCHFVLVASPSYLSIQGIPYHPYDLKKHNCLTYVSRERKDNVWGFHKDNDNLQIKVSGNYRIDSADAIRNATIAGSGIGY
VATYLLSDELRTGKLIQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFVRQHINSEKIDNI

Sequences:

>Translated_303_residues
MLKQAKQMIVFNALHQQQSFTKAAQLLEISRTQVSKQIQLLEERLGVQLVQRTTRSFSLTEAGQSFAVHCANIADEINEA
ENELLSNVDNLQGKLRVGIAQSFATNHILPYLSELHQRYPLLNVEITLFDHKIDVIAEQLDLWIGVMDSPPEGFVARHLI
DCHFVLVASPSYLSIQGIPYHPYDLKKHNCLTYVSRERKDNVWGFHKDNDNLQIKVSGNYRIDSADAIRNATIAGSGIGY
VATYLLSDELRTGKLIQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFVRQHINSEKIDNI
>Mature_303_residues
MLKQAKQMIVFNALHQQQSFTKAAQLLEISRTQVSKQIQLLEERLGVQLVQRTTRSFSLTEAGQSFAVHCANIADEINEA
ENELLSNVDNLQGKLRVGIAQSFATNHILPYLSELHQRYPLLNVEITLFDHKIDVIAEQLDLWIGVMDSPPEGFVARHLI
DCHFVLVASPSYLSIQGIPYHPYDLKKHNCLTYVSRERKDNVWGFHKDNDNLQIKVSGNYRIDSADAIRNATIAGSGIGY
VATYLLSDELRTGKLIQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFVRQHINSEKIDNI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=26.9360269360269, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=30.3135888501742, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=30.7692307692308, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=30.1694915254237, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=30.2083333333333, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI87081978, Length=285, Percent_Identity=30.1754385964912, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=24.3150684931507, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789173, Length=248, Percent_Identity=30.241935483871, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI157672245, Length=141, Percent_Identity=29.0780141843972, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788748, Length=200, Percent_Identity=30.5, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787601, Length=175, Percent_Identity=28, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=23.6666666666667, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082132, Length=298, Percent_Identity=23.8255033557047, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790011, Length=306, Percent_Identity=22.8758169934641, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=268, Percent_Identity=23.8805970149254, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34653; Mature: 34653

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQAKQMIVFNALHQQQSFTKAAQLLEISRTQVSKQIQLLEERLGVQLVQRTTRSFSLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EAGQSFAVHCANIADEINEAENELLSNVDNLQGKLRVGIAQSFATNHILPYLSELHQRYP
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCC
LLNVEITLFDHKIDVIAEQLDLWIGVMDSPPEGFVARHLIDCHFVLVASPSYLSIQGIPY
EEEEEEEEECCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHEEEEEEECCCEEEEECCCC
HPYDLKKHNCLTYVSRERKDNVWGFHKDNDNLQIKVSGNYRIDSADAIRNATIAGSGIGY
CCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEECCEEECCHHHHHCCEECCCCHHH
VATYLLSDELRTGKLIQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFVRQHINSEKI
HHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEECCCHHCCHHHHHHHHHHHHHHCCCCCC
DNI
CCC
>Mature Secondary Structure
MLKQAKQMIVFNALHQQQSFTKAAQLLEISRTQVSKQIQLLEERLGVQLVQRTTRSFSLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EAGQSFAVHCANIADEINEAENELLSNVDNLQGKLRVGIAQSFATNHILPYLSELHQRYP
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCC
LLNVEITLFDHKIDVIAEQLDLWIGVMDSPPEGFVARHLIDCHFVLVASPSYLSIQGIPY
EEEEEEEEECCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHEEEEEEECCCEEEEECCCC
HPYDLKKHNCLTYVSRERKDNVWGFHKDNDNLQIKVSGNYRIDSADAIRNATIAGSGIGY
CCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEECCEEECCHHHHHCCEECCCCHHH
VATYLLSDELRTGKLIQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFVRQHINSEKI
HHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEECCCHHCCHHHHHHHHHHHHHHCCCCCC
DNI
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]