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The map label for this gene is ctaD [H]

Identifier: 209695066

GI number: 209695066

Start: 1675242

End: 1676672

Strand: Direct

Name: ctaD [H]

Synonym: VSAL_I1563

Alternate gene names: 209695066

Gene position: 1675242-1676672 (Clockwise)

Preceding gene: 209695061

Following gene: 209695067

Centisome position: 50.38

GC content: 41.51

Gene sequence:

>1431_bases
ATGAGCCAATTACAGCAGCATGAACAAAACTACAACTATACCGTTGTTCGCCAATTCACCTTAGTTACCATTCTATGGGG
TATTGTTGGCATGGGTGTAGGTGTATTAATTGCCGCTCAATTAGTCTGGCCGCAACTGAATTTTGACACACCATGGCTTA
CGTATAGCCGTTTGCGTCCTCTGCATACTAATGCAGTGATTTTCGCATTCGGTACAAGTGCCCTATTTGCAACATCTTAT
TATGTTGTTCAGCGTACTTGTCAAACACGTTTGTTTGGTGGTCCATTAGTTGCGTTCACCTTCTGGGGATGGCAAGCAAT
TATCTTAGCAGCAGCAATTTCGTTGCCTCTAGGAATGACATCAGGAAAAGAATATGCAGAATTAGAGTGGCCGATCGATA
TCGCTATCACTTTAGTTTGGGTGGCTTATGCCATTGTATTCTTTGGAACTCTGTTTAAACGTAATACTTCTCATATTTAC
GTTGCAAACTGGTTCTTTGGAGCCTTCATTTTAACCGTTGCCGTTCTTCATATTGTGAATAGCCTTGCTGTTCCAGTATC
ACTGACTAAATCATATTCGATTTATTCTGGTGCGGTAGATGCGATGGTTCAATGGTGGTATGGCCATAACGCAGTAGGTT
TCCTATTGACTGCTGGCTTCTTAGGAATGATGTACTATTTCGTACCAAAACAAGCAGAACGTCCAGTTTATTCTTACCGT
TTATCTATTGTTCACTTCTGGGCATTAATATCACTTTATATCTGGGCTGGTCCTCACCACTTACATTATACCGCTCTACC
TGACTGGACTCAGTCTTTAGGTATGGTGATGTCATTGGTTCTATTCGCACCGTCTTGGGGCGGAATGATCAATGGTATAA
TGACGTTATCTGGTGCTTGGCATAAGCTACGTTATGACCCTATCCTTCGATTCTTAGTCGTTTCTTTATCGTTCTATGGT
ATGTCTACCTTTGAAGGTCCGATGATGGCGATTAAATCAGTTAACGCACTCTCTCATTATACTGACTGGACTATCGGTCA
TGTTCATTCTGGTGCGTTAGGTTGGGTTGCTATGGTAACGATTGGTTCACTGTACCACTTAATTCCTAAGCTGTTTGGTC
AAGAGCGCATGTACTCTGTATCACTCATCAATGTTCATTTTGGGTTAGCGACAATTGGTACTGTTCTTTATATCGTGGCA
ATGTGGATTTCAGGTGTGATGCAAGGTCTAATGTGGCGTGCGGTTAACGCTGATGGCACATTAACGTATAGCTTTGTTGA
ATCATTAGAAGCCTCTTACCCATTCTATTTCGTTCGTTTTGTTGGTGGTTTAATCTTCCTTTCAGGTATGTTCCTACTTG
CATATAATGCATATAAGACCATTTCTTCACCGAAGAATAGCCTAAAAGCAATTCCTCAACCGGCACAATAA

Upstream 100 bases:

>100_bases
TCCAATTATTAAGAAGTTGAATTTTGGATGGTGTTGCGAACTTTGTTCGCGTTAAGGAAAGTAAAGTGTAGTTATAATAA
AAAAGTGGAAGCATGCAATT

Downstream 100 bases:

>100_bases
GGAGACCAGATTATGAGTTCTAATCGTCATGAAATCATAGAAAAAAATGTTGGCCTTCTAGCCGTTTTGGTTGTTGTTGC
TATCAGTTTTGGTGCGTTAG

Product: cbb3-type cytochrome c oxidase subunit I

Products: NA

Alternate protein names: Cytochrome BB(3) subunit 1; Cytochrome c oxidase polypeptide I [H]

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MSQLQQHEQNYNYTVVRQFTLVTILWGIVGMGVGVLIAAQLVWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFATSY
YVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAISLPLGMTSGKEYAELEWPIDIAITLVWVAYAIVFFGTLFKRNTSHIY
VANWFFGAFILTVAVLHIVNSLAVPVSLTKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYSYR
LSIVHFWALISLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAWHKLRYDPILRFLVVSLSFYG
MSTFEGPMMAIKSVNALSHYTDWTIGHVHSGALGWVAMVTIGSLYHLIPKLFGQERMYSVSLINVHFGLATIGTVLYIVA
MWISGVMQGLMWRAVNADGTLTYSFVESLEASYPFYFVRFVGGLIFLSGMFLLAYNAYKTISSPKNSLKAIPQPAQ

Sequences:

>Translated_476_residues
MSQLQQHEQNYNYTVVRQFTLVTILWGIVGMGVGVLIAAQLVWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFATSY
YVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAISLPLGMTSGKEYAELEWPIDIAITLVWVAYAIVFFGTLFKRNTSHIY
VANWFFGAFILTVAVLHIVNSLAVPVSLTKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYSYR
LSIVHFWALISLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAWHKLRYDPILRFLVVSLSFYG
MSTFEGPMMAIKSVNALSHYTDWTIGHVHSGALGWVAMVTIGSLYHLIPKLFGQERMYSVSLINVHFGLATIGTVLYIVA
MWISGVMQGLMWRAVNADGTLTYSFVESLEASYPFYFVRFVGGLIFLSGMFLLAYNAYKTISSPKNSLKAIPQPAQ
>Mature_475_residues
SQLQQHEQNYNYTVVRQFTLVTILWGIVGMGVGVLIAAQLVWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFATSYY
VVQRTCQTRLFGGPLVAFTFWGWQAIILAAAISLPLGMTSGKEYAELEWPIDIAITLVWVAYAIVFFGTLFKRNTSHIYV
ANWFFGAFILTVAVLHIVNSLAVPVSLTKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYSYRL
SIVHFWALISLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAWHKLRYDPILRFLVVSLSFYGM
STFEGPMMAIKSVNALSHYTDWTIGHVHSGALGWVAMVTIGSLYHLIPKLFGQERMYSVSLINVHFGLATIGTVLYIVAM
WISGVMQGLMWRAVNADGTLTYSFVESLEASYPFYFVRFVGGLIFLSGMFLLAYNAYKTISSPKNSLKAIPQPAQ

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Co I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG3278

COG function: function code O; Cbb3-type cytochrome oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004677
- InterPro:   IPR000883 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 53410; Mature: 53279

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLQQHEQNYNYTVVRQFTLVTILWGIVGMGVGVLIAAQLVWPQLNFDTPWLTYSRLRP
CCCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCC
LHTNAVIFAFGTSALFATSYYVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAISLPLGMT
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
SGKEYAELEWPIDIAITLVWVAYAIVFFGTLFKRNTSHIYVANWFFGAFILTVAVLHIVN
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH
SLAVPVSLTKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYSYR
HHCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LSIVHFWALISLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAW
HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCH
HKLRYDPILRFLVVSLSFYGMSTFEGPMMAIKSVNALSHYTDWTIGHVHSGALGWVAMVT
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHH
IGSLYHLIPKLFGQERMYSVSLINVHFGLATIGTVLYIVAMWISGVMQGLMWRAVNADGT
HHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
LTYSFVESLEASYPFYFVRFVGGLIFLSGMFLLAYNAYKTISSPKNSLKAIPQPAQ
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
>Mature Secondary Structure 
SQLQQHEQNYNYTVVRQFTLVTILWGIVGMGVGVLIAAQLVWPQLNFDTPWLTYSRLRP
CCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCC
LHTNAVIFAFGTSALFATSYYVVQRTCQTRLFGGPLVAFTFWGWQAIILAAAISLPLGMT
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
SGKEYAELEWPIDIAITLVWVAYAIVFFGTLFKRNTSHIYVANWFFGAFILTVAVLHIVN
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH
SLAVPVSLTKSYSIYSGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAERPVYSYR
HHCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LSIVHFWALISLYIWAGPHHLHYTALPDWTQSLGMVMSLVLFAPSWGGMINGIMTLSGAW
HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCH
HKLRYDPILRFLVVSLSFYGMSTFEGPMMAIKSVNALSHYTDWTIGHVHSGALGWVAMVT
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHH
IGSLYHLIPKLFGQERMYSVSLINVHFGLATIGTVLYIVAMWISGVMQGLMWRAVNADGT
HHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
LTYSFVESLEASYPFYFVRFVGGLIFLSGMFLLAYNAYKTISSPKNSLKAIPQPAQ
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7891558 [H]