Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695040
Identifier: 209695040
GI number: 209695040
Start: 1635734
End: 1636627
Strand: Direct
Name: 209695040
Synonym: VSAL_I1535
Alternate gene names: NA
Gene position: 1635734-1636627 (Clockwise)
Preceding gene: 209695038
Following gene: 209695041
Centisome position: 49.19
GC content: 40.16
Gene sequence:
>894_bases ATGACTATTCTTTTGCTGTTACAAATTAGCCTTATTATTGGTGGGTTAATTTTTCTTTATATGTTGATTTCATTATGGCT CAGAAAAAAAGAATCAGAGAAAAAAACGAACGTATGGGCGATTGGTCTGATTGGTGGTTTTGCTAACTTTTGCGACACGT TAGGTGTAGGCAGTTTTGCAATAAAAACGGCGGGCTATAAACAATTTAATTTGGTTGATGACCGAGTATTACCTGGGACA TTAAACGCTCAAGCGACGATGGCGACAGTATTTCAAGCATTGATTTTCTTAACTGCAGTTAATGTTGATTTAACCACGTT ATTGAGCCTAATTATTGCGGCTTGTGTCGGGGCAACGGTAGGGGCTCGCTTGGTATCCAATTTTGATCGTCAATTGATTC GTTTAATTATGGCTGGTGCGTTATTTATTGTTGCGATGTTGATGTTTGCTGGTCGTTTTGAATTATTCCCATTGGGCGGT GATGAGCTCGGTCTCTCGGGTGAAAAATTAGTTATTGCTGTTATTGGTAATTTTATTTTTGGTGCCTTGATGACGGTTGG TATTGGGTTGTACGCGCCTTGTATGACGATGATTTATTTATTAGGGATGAACCCACTGGCGGCTTTTCCTATTATGATGT GTTCATGTGCTTTCTTATGTTTTTTCTCTGCCGGTGGCTTTATTAAACAAAAAGCCGTGAATTCTAGGGCCTCATTGGTT GTGGCCATTACAGGGCCGATTGGGGTATTGATTGCTGCTTTTATCGTGAAGTCTCTTGATGTTGATATGCTTGCTTGGCT AGTGGCAATTGTTGTTCTATATACCGCCATTATGATGCTACGTTCTTGGTGTGCAGGCCGAAATGAGGTGATGATTGAAT CAACCGATCAATAA
Upstream 100 bases:
>100_bases TGGCATTATCTCTCGTCCCTTTTGTTATAAGGCGTCTCTCTGGTTTTTACCCGTAAACTGGATTATGATTTGCGGCTTTC CTGTTGCTGTGTAAATTATC
Downstream 100 bases:
>100_bases ATAGTCGATAAAGCATCATTTTCTATCACATAATTATTGGAGTTATAAAAAGTTCATGGTATTTTTCGTACACCAATTTT TTATGGATGTTTTATCATGC
Product: membrane protein
Products: NA
Alternate protein names: Membrane Family Protein; Permease; Na+/Solute Symporter
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MTILLLLQISLIIGGLIFLYMLISLWLRKKESEKKTNVWAIGLIGGFANFCDTLGVGSFAIKTAGYKQFNLVDDRVLPGT LNAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATVGARLVSNFDRQLIRLIMAGALFIVAMLMFAGRFELFPLGG DELGLSGEKLVIAVIGNFIFGALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLV VAITGPIGVLIAAFIVKSLDVDMLAWLVAIVVLYTAIMMLRSWCAGRNEVMIESTDQ
Sequences:
>Translated_297_residues MTILLLLQISLIIGGLIFLYMLISLWLRKKESEKKTNVWAIGLIGGFANFCDTLGVGSFAIKTAGYKQFNLVDDRVLPGT LNAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATVGARLVSNFDRQLIRLIMAGALFIVAMLMFAGRFELFPLGG DELGLSGEKLVIAVIGNFIFGALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLV VAITGPIGVLIAAFIVKSLDVDMLAWLVAIVVLYTAIMMLRSWCAGRNEVMIESTDQ >Mature_296_residues TILLLLQISLIIGGLIFLYMLISLWLRKKESEKKTNVWAIGLIGGFANFCDTLGVGSFAIKTAGYKQFNLVDDRVLPGTL NAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATVGARLVSNFDRQLIRLIMAGALFIVAMLMFAGRFELFPLGGD ELGLSGEKLVIAVIGNFIFGALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLVV AITGPIGVLIAAFIVKSLDVDMLAWLVAIVVLYTAIMMLRSWCAGRNEVMIESTDQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31954; Mature: 31823
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTILLLLQISLIIGGLIFLYMLISLWLRKKESEKKTNVWAIGLIGGFANFCDTLGVGSFA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEHHHHHHHHHHHHHCCCCHH IKTAGYKQFNLVDDRVLPGTLNAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATV HHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GARLVSNFDRQLIRLIMAGALFIVAMLMFAGRFELFPLGGDELGLSGEKLVIAVIGNFIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH GALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLV HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEE VAITGPIGVLIAAFIVKSLDVDMLAWLVAIVVLYTAIMMLRSWCAGRNEVMIESTDQ EEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC >Mature Secondary Structure TILLLLQISLIIGGLIFLYMLISLWLRKKESEKKTNVWAIGLIGGFANFCDTLGVGSFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEHHHHHHHHHHHHHCCCCHH IKTAGYKQFNLVDDRVLPGTLNAQATMATVFQALIFLTAVNVDLTTLLSLIIAACVGATV HHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GARLVSNFDRQLIRLIMAGALFIVAMLMFAGRFELFPLGGDELGLSGEKLVIAVIGNFIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH GALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSAGGFIKQKAVNSRASLV HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEE VAITGPIGVLIAAFIVKSLDVDMLAWLVAIVVLYTAIMMLRSWCAGRNEVMIESTDQ EEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA