Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209695017
Identifier: 209695017
GI number: 209695017
Start: 1612856
End: 1613518
Strand: Direct
Name: 209695017
Synonym: VSAL_I1509
Alternate gene names: NA
Gene position: 1612856-1613518 (Clockwise)
Preceding gene: 209695015
Following gene: 209695018
Centisome position: 48.5
GC content: 37.86
Gene sequence:
>663_bases ATGGATAGCTTTTTTAGTAGTGAGATTATTCTTTCTAATTCGACCTTCTTTTTCTTTATGACTCTGTTATTGACAGGGTT TCTTCATATACCGCTGTGGTGCGGTAAAAATTTATCAAAAATACAATGGAAGAAAGTCGATTACCTTTGGCCTTTAGTCG CAGGAATTGGTTTGATGGGGACGGTATCAGAGGTGAGATCAAGAGTCGCTAGTGATTGGGCTGAGACTGAACATACCCGT GCTGTTTTAAGTCTTGAATCTATTAATGACTATACAGTCAATCAACTAAAGAGCTTTCTTTGTGCGAGTGAACCAAGGGT CAATAGAGGTGTTGAATCACAACAATCTTGTTCATGGTTTTTAAATTCAGCAAATTACTTACAGTCGGTAAACTTTAACG AACTTCCTAATCTTACGTTTGATAGTTTACCTGAAATTACGTTTCGCTCAGAGCTGATAGAGTCAGATGTCATGTGGTTG CAGGGGATGTTTGATAATTACCAGAGTCAGAAGTACGCGTATGAAAGTACAGTACTCGAGACGAAGAAGCACCCACTAGA GGAACTCTTTTGGTATTTAAGTCCTTACTTAATTTGTATTGCGATTTCTGTACGTGTTACAAAAGTATCAGCAGAATTAA AAATGGAGAGACAAGAAGGATGA
Upstream 100 bases:
>100_bases GATTTTCATAATGGTATAAACGATAATCTGAATTATTTTAGTTACAGCAAGTCTATTGTTGGTGTTATTTTTAAAGAATC ATGCATATAAATAGGTAGTT
Downstream 100 bases:
>100_bases GGTCGAAAGCTTCCGATTGGGGGCGAGTATCAATCAATGTTGAACGTTATTATAAGATTATTCACTAGCGATTAGCGAGA TGCCTGGTCTGTCCAGATGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMGTVSEVRSRVASDWAETEHTR AVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWFLNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWL QGMFDNYQSQKYAYESTVLETKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG
Sequences:
>Translated_220_residues MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMGTVSEVRSRVASDWAETEHTR AVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWFLNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWL QGMFDNYQSQKYAYESTVLETKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG >Mature_220_residues MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMGTVSEVRSRVASDWAETEHTR AVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWFLNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWL QGMFDNYQSQKYAYESTVLETKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25408; Mature: 25408
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMG CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH TVSEVRSRVASDWAETEHTRAVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH LNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWLQGMFDNYQSQKYAYESTVLE HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG HHCCCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCC >Mature Secondary Structure MDSFFSSEIILSNSTFFFFMTLLLTGFLHIPLWCGKNLSKIQWKKVDYLWPLVAGIGLMG CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH TVSEVRSRVASDWAETEHTRAVLSLESINDYTVNQLKSFLCASEPRVNRGVESQQSCSWF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH LNSANYLQSVNFNELPNLTFDSLPEITFRSELIESDVMWLQGMFDNYQSQKYAYESTVLE HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TKKHPLEELFWYLSPYLICIAISVRVTKVSAELKMERQEG HHCCCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA