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The map label for this gene is yddE [C]

Identifier: 209695014

GI number: 209695014

Start: 1610424

End: 1611224

Strand: Direct

Name: yddE [C]

Synonym: VSAL_I1506

Alternate gene names: 209695014

Gene position: 1610424-1611224 (Clockwise)

Preceding gene: 209695013

Following gene: 209695015

Centisome position: 48.43

GC content: 40.2

Gene sequence:

>801_bases
ATGGATTTGAACATATATCAAGTGGACTCTTTCACAACGGAAGCATTTAAAGGAAACCCTGCGGGTGTTTGCATTAGTGA
AAGTGGGCTAACAGAAGCATTAATGTTGTCTATTGCTGAAGAAATGGCGGTATCGGAAACTGCTTTTTTATCGCTTTCCA
ATATGAGATTAAGGTGGTTTACCCCTAAAGTTGAAGTGGCTTTGTGTGGTCACGGTACTTTGGCTGTTGCACATGTATTA
AAAGAAATCGGCTTAGCTAATGTAGGTGAGAGCGTTGTTTTTAATACATTGTCAGGTGCGTTATCTGCGAAACTTCAAGA
TTCAACCATTGAATTAGATTTCCCACCAACCACCATTTCGTTTGATACGGTAAAGAATGAAGCGTTATTGGCGTGTTTAG
GGATTAATGAAAAAGAAGTTATCTCACTCGGCCAGTTTGATTCCAAAGAGTTCATAGAAATAGAAAGTGAAGAGGCACTA
TTGGCATTGTCTCCTAATTTTGATGGGTTGAAACAACTTACCGGTCGTGGTGTGTTAGTTACAGCGAAGTCGTCATCGGA
TGAATTGGATTTTGTTTCTCGTTATTTTGCACCTTGGGTAGGGGTTAATGAAGATCCGGTAACTGGATCTGCGCATTGTG
CATTAACGGTCTATTGGGCTGAAAAGCTAAATAAGACCACATTTATGGGGTATCAGGCCTCTTCTCGTGGTGGTTACGTT
GGTAGTGAACTTCTTTCTAATGGACGAATAAAATTGATTGGCTCTGCGGTAACAACGATAAAAGGTCAAATGTTCGTATA
A

Upstream 100 bases:

>100_bases
GTACCAACAAAAAATAGCAGAAAAAGAGCAAAAGATAGACGATCTTAAAAAAGAGTTACTGAGAATAAAATAGACAGTAT
TACTAAGGGGTAAACAGTCA

Downstream 100 bases:

>100_bases
TACATTGAGACTCTATAATGTATTGATTCATATGAGAGAGTATAAAAATGATTGTGTGTGAAAGTGAAAGAGTGACAGTT
CGTCAATTTACGCTGGATGA

Product: phenazine biosynthesis-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDLNIYQVDSFTTEAFKGNPAGVCISESGLTEALMLSIAEEMAVSETAFLSLSNMRLRWFTPKVEVALCGHGTLAVAHVL
KEIGLANVGESVVFNTLSGALSAKLQDSTIELDFPPTTISFDTVKNEALLACLGINEKEVISLGQFDSKEFIEIESEEAL
LALSPNFDGLKQLTGRGVLVTAKSSSDELDFVSRYFAPWVGVNEDPVTGSAHCALTVYWAEKLNKTTFMGYQASSRGGYV
GSELLSNGRIKLIGSAVTTIKGQMFV

Sequences:

>Translated_266_residues
MDLNIYQVDSFTTEAFKGNPAGVCISESGLTEALMLSIAEEMAVSETAFLSLSNMRLRWFTPKVEVALCGHGTLAVAHVL
KEIGLANVGESVVFNTLSGALSAKLQDSTIELDFPPTTISFDTVKNEALLACLGINEKEVISLGQFDSKEFIEIESEEAL
LALSPNFDGLKQLTGRGVLVTAKSSSDELDFVSRYFAPWVGVNEDPVTGSAHCALTVYWAEKLNKTTFMGYQASSRGGYV
GSELLSNGRIKLIGSAVTTIKGQMFV
>Mature_266_residues
MDLNIYQVDSFTTEAFKGNPAGVCISESGLTEALMLSIAEEMAVSETAFLSLSNMRLRWFTPKVEVALCGHGTLAVAHVL
KEIGLANVGESVVFNTLSGALSAKLQDSTIELDFPPTTISFDTVKNEALLACLGINEKEVISLGQFDSKEFIEIESEEAL
LALSPNFDGLKQLTGRGVLVTAKSSSDELDFVSRYFAPWVGVNEDPVTGSAHCALTVYWAEKLNKTTFMGYQASSRGGYV
GSELLSNGRIKLIGSAVTTIKGQMFV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=295, Percent_Identity=37.9661016949153, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI74316009, Length=264, Percent_Identity=38.6363636363636, Blast_Score=149, Evalue=2e-36,
Organism=Escherichia coli, GI1787737, Length=275, Percent_Identity=30.5454545454545, Blast_Score=105, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17542160, Length=308, Percent_Identity=32.4675324675325, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17542154, Length=308, Percent_Identity=32.4675324675325, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17542158, Length=309, Percent_Identity=32.0388349514563, Blast_Score=137, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI17542152, Length=309, Percent_Identity=32.0388349514563, Blast_Score=137, Evalue=5e-33,
Organism=Saccharomyces cerevisiae, GI6321818, Length=291, Percent_Identity=26.8041237113402, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28598; Mature: 28598

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNIYQVDSFTTEAFKGNPAGVCISESGLTEALMLSIAEEMAVSETAFLSLSNMRLRWF
CCCEEEEECCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEECCCEEEEE
TPKVEVALCGHGTLAVAHVLKEIGLANVGESVVFNTLSGALSAKLQDSTIELDFPPTTIS
CCCEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCEEEEECCCCEEE
FDTVKNEALLACLGINEKEVISLGQFDSKEFIEIESEEALLALSPNFDGLKQLTGRGVLV
HHCCCCCEEEEEECCCHHHEEEECCCCCCCEEEEECCCEEEEECCCCHHHHHHCCCEEEE
TAKSSSDELDFVSRYFAPWVGVNEDPVTGSAHCALTVYWAEKLNKTTFMGYQASSRGGYV
EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHCCCEEEEEEEECCCCCCC
GSELLSNGRIKLIGSAVTTIKGQMFV
CHHHHCCCCEEEEEEEEHHCCCEECC
>Mature Secondary Structure
MDLNIYQVDSFTTEAFKGNPAGVCISESGLTEALMLSIAEEMAVSETAFLSLSNMRLRWF
CCCEEEEECCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEECCCEEEEE
TPKVEVALCGHGTLAVAHVLKEIGLANVGESVVFNTLSGALSAKLQDSTIELDFPPTTIS
CCCEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEECCCEEEEECCCCEEE
FDTVKNEALLACLGINEKEVISLGQFDSKEFIEIESEEALLALSPNFDGLKQLTGRGVLV
HHCCCCCEEEEEECCCHHHEEEECCCCCCCEEEEECCCEEEEECCCCHHHHHHCCCEEEE
TAKSSSDELDFVSRYFAPWVGVNEDPVTGSAHCALTVYWAEKLNKTTFMGYQASSRGGYV
EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHCCCEEEEEEEECCCCCCC
GSELLSNGRIKLIGSAVTTIKGQMFV
CHHHHCCCCEEEEEEEEHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]