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The map label for this gene is ybcM [C]

Identifier: 209694976

GI number: 209694976

Start: 1579165

End: 1579944

Strand: Direct

Name: ybcM [C]

Synonym: VSAL_I1460

Alternate gene names: 209694976

Gene position: 1579165-1579944 (Clockwise)

Preceding gene: 209694975

Following gene: 209694979

Centisome position: 47.49

GC content: 27.05

Gene sequence:

>780_bases
TTGTTTAAAGCTTTTAGCTATAAAGCAAAAGAAGTTCAAAAGTTAAAAGACGTTGTAATAATTAATCCATGTATTATTTG
GGTCCTTAGTGGTATGAAAAATATATCTCTTGGTCGGTATAAATATAACCTGAAAAATGGGGATGCAATACTTCTTGGGG
CTAATAGTAAACTGAATTTTGAAAATATCCCCATAAACGGTTTGTTTTTTTCTAAGCAAATAATATTTTTTAAACCACCA
AAAGTTGAGTTCTTTAAACAAACAGTAAAAAATTTTGAAGTTTCTAAATATAGAAATATTAAACTAGATTATCAATTGAA
AATGACTTTAGACTTACTTCATCAATCTGATGTTATTTTAAAGAATATAAATACAAGACATATGTGGTTAGATGGATTAT
ATCTATTATTAGCAGAGGAATATTATCTTCAAGTACTATTTTTATCTTCTGAAGGCAGTTTTAATGAAAAAGTGTATGAA
GTTTTAGAAAAAATGCAACCTAGTGATCATAAAATAGAAAATGTATGTTCAATTTTAGGTGTAAGTAAAGCAACACTTAT
TAGACGATTGAAGAAAGCTGGAACTCAATTTAAGAAAATAGTAAGACAAGTTAGAATGAATAAAGCCTTATTTCTTATGC
AAAAAAGAGAGCTTCTTTTAGAAGATATATCTTTTTCTTGTGGTTATCAATCAGTAGAACTTTTAGTCGTGTATTTTAAA
GAGGAGTTTGGCATCACACCAAAAGAATATTCCATTTCTTTCAAAGATGTTCAAATGTAA

Upstream 100 bases:

>100_bases
TTATTATTACTATATTGACACTTTTACTTATAGACTATTGTTTATAATGTATTAAAATGTGCTACATGTTAAAAAAAGAA
AACAAATTTAGGATTGTAAA

Downstream 100 bases:

>100_bases
TTAACGTTAATTTTTAATTAGATAAATGAATTTAAATGAAGCAGAAATGGTATATCAACCTAAAATAAGAAGAAATAAAT
TAGTATCAATAGAAGCATTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC/XylS Family Transcriptional Regulator; Transcriptional Regulator AraC/XylS Family; Helix-Turn-Helix Domain-Containing Protein; AraC/XylS Family Transcription Factor; HTH-Type Transcriptional Regulator AraC Family; Transcriptional Regulatory Protein AraC-Like Protein

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFKAFSYKAKEVQKLKDVVIINPCIIWVLSGMKNISLGRYKYNLKNGDAILLGANSKLNFENIPINGLFFSKQIIFFKPP
KVEFFKQTVKNFEVSKYRNIKLDYQLKMTLDLLHQSDVILKNINTRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYE
VLEKMQPSDHKIENVCSILGVSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDISFSCGYQSVELLVVYFK
EEFGITPKEYSISFKDVQM

Sequences:

>Translated_259_residues
MFKAFSYKAKEVQKLKDVVIINPCIIWVLSGMKNISLGRYKYNLKNGDAILLGANSKLNFENIPINGLFFSKQIIFFKPP
KVEFFKQTVKNFEVSKYRNIKLDYQLKMTLDLLHQSDVILKNINTRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYE
VLEKMQPSDHKIENVCSILGVSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDISFSCGYQSVELLVVYFK
EEFGITPKEYSISFKDVQM
>Mature_259_residues
MFKAFSYKAKEVQKLKDVVIINPCIIWVLSGMKNISLGRYKYNLKNGDAILLGANSKLNFENIPINGLFFSKQIIFFKPP
KVEFFKQTVKNFEVSKYRNIKLDYQLKMTLDLLHQSDVILKNINTRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYE
VLEKMQPSDHKIENVCSILGVSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDISFSCGYQSVELLVVYFK
EEFGITPKEYSISFKDVQM

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30305; Mature: 30305

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKAFSYKAKEVQKLKDVVIINPCIIWVLSGMKNISLGRYKYNLKNGDAILLGANSKLNF
CCCCCCCCHHHHHHHHCEEEEHHHHHHHHHCCCCCEECEEEEEECCCCEEEEECCCCCCC
ENIPINGLFFSKQIIFFKPPKVEFFKQTVKNFEVSKYRNIKLDYQLKMTLDLLHQSDVIL
CCCCCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCEECEEEEEEEEHHHHHHHCCCHHE
KNINTRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYEVLEKMQPSDHKIENVCSILG
ECCCCCCHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHC
VSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDISFSCGYQSVELLVVYFK
CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEH
EEFGITPKEYSISFKDVQM
HHHCCCCCHHEEEEEECCC
>Mature Secondary Structure
MFKAFSYKAKEVQKLKDVVIINPCIIWVLSGMKNISLGRYKYNLKNGDAILLGANSKLNF
CCCCCCCCHHHHHHHHCEEEEHHHHHHHHHCCCCCEECEEEEEECCCCEEEEECCCCCCC
ENIPINGLFFSKQIIFFKPPKVEFFKQTVKNFEVSKYRNIKLDYQLKMTLDLLHQSDVIL
CCCCCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCEECEEEEEEEEHHHHHHHCCCHHE
KNINTRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYEVLEKMQPSDHKIENVCSILG
ECCCCCCHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHC
VSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDISFSCGYQSVELLVVYFK
CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEH
EEFGITPKEYSISFKDVQM
HHHCCCCCHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA