Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694968
Identifier: 209694968
GI number: 209694968
Start: 1569431
End: 1570042
Strand: Direct
Name: 209694968
Synonym: VSAL_I1451
Alternate gene names: NA
Gene position: 1569431-1570042 (Clockwise)
Preceding gene: 209694967
Following gene: 209694969
Centisome position: 47.2
GC content: 44.12
Gene sequence:
>612_bases ATGAATGAACAACACCAGATCCGACAAGAAATTTATGGCTTATTAGCGCATTTATTCCGTTCAGCACCAGAGCAAGCATT GGTTGATTGGTTAGTCACCATAGAAACGGAGCAGAGCGAAACCCACGGCATGAGTCAAGCGTGGAGCCAATTGGTTAAGG CGGCAGAGCAAGCCAGCCTTAACGACACGCTAGAAAAACTAGAAGACGAATACCAAAACCTATTTATTGGTGTTGGCCGC GGTGAAGTGATGCAATTTGGATCATGGCACATTGCGGGAGCATTAATGGAAAAACCATTAGTCGCACTTCGCCAAGACCT AATGCAGTTGGGTTTTGAACGCGCAGAAGACGTAAAAGAACCAGAAGACCATATCTCAGCATTATGCGAAGTGATGGCGA TGTTGATAGAAGCAGGTGAGGCAGAAGTACTGCAACAACGTTTCTTTAATCGTCATATTCAACCTTGGTATGTCTCGCTG TGTGATCAAATCAATAATGCTCAAAACGCCGATTTTTATAAATCAGTGGCGTGTTTAGCGGAAGCGTTCTTCACGGTAGA ACAAACCCGTTTTGCAAAGAACCCAAATGAGATTGAAGTGACTGCGATTTAA
Upstream 100 bases:
>100_bases GCTTCAATCAACCGTCTATACATGTGCGAAGACTGTCGAGTAAAAGACATCTTTATCGACTTATCAGCAAATCCAGAAAA ACAATTAAAGGTCTAATACC
Downstream 100 bases:
>100_bases TTCGCGGTGACAAGAACAGAATTAAAACCATAAAAACAGACGCCCATTCCAAGTGAATTGGAAGCAAAGGAGCATAGCAT GAGCAATAAAAAAACGGACC
Product: cytoplasmic chaperone TorD
Products: NA
Alternate protein names: Cytoplasmic Chaperone rD; Chaperone rD Family; Chaperone; RD Family Cytoplasmic Chaperone; RA Specific Chaperone; Cytoplasmic Chaperone rD Subfamily; Formate Dehydrogenase-Specific Chaperone; Chaperone Protein rD; Chaperone rD; Chaperone Protein rD Family; Multi-Domain Fusion Protein; Cytoplasmic Chaperone rd Family Protein
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MNEQHQIRQEIYGLLAHLFRSAPEQALVDWLVTIETEQSETHGMSQAWSQLVKAAEQASLNDTLEKLEDEYQNLFIGVGR GEVMQFGSWHIAGALMEKPLVALRQDLMQLGFERAEDVKEPEDHISALCEVMAMLIEAGEAEVLQQRFFNRHIQPWYVSL CDQINNAQNADFYKSVACLAEAFFTVEQTRFAKNPNEIEVTAI
Sequences:
>Translated_203_residues MNEQHQIRQEIYGLLAHLFRSAPEQALVDWLVTIETEQSETHGMSQAWSQLVKAAEQASLNDTLEKLEDEYQNLFIGVGR GEVMQFGSWHIAGALMEKPLVALRQDLMQLGFERAEDVKEPEDHISALCEVMAMLIEAGEAEVLQQRFFNRHIQPWYVSL CDQINNAQNADFYKSVACLAEAFFTVEQTRFAKNPNEIEVTAI >Mature_203_residues MNEQHQIRQEIYGLLAHLFRSAPEQALVDWLVTIETEQSETHGMSQAWSQLVKAAEQASLNDTLEKLEDEYQNLFIGVGR GEVMQFGSWHIAGALMEKPLVALRQDLMQLGFERAEDVKEPEDHISALCEVMAMLIEAGEAEVLQQRFFNRHIQPWYVSL CDQINNAQNADFYKSVACLAEAFFTVEQTRFAKNPNEIEVTAI
Specific function: Unknown
COG id: COG3381
COG function: function code R; Uncharacterized component of anaerobic dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23160; Mature: 23160
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEQHQIRQEIYGLLAHLFRSAPEQALVDWLVTIETEQSETHGMSQAWSQLVKAAEQASL CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHH NDTLEKLEDEYQNLFIGVGRGEVMQFGSWHIAGALMEKPLVALRQDLMQLGFERAEDVKE HHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PEDHISALCEVMAMLIEAGEAEVLQQRFFNRHIQPWYVSLCDQINNAQNADFYKSVACLA HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH EAFFTVEQTRFAKNPNEIEVTAI HHHHHHHHHHHCCCCCCEEEEEC >Mature Secondary Structure MNEQHQIRQEIYGLLAHLFRSAPEQALVDWLVTIETEQSETHGMSQAWSQLVKAAEQASL CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHH NDTLEKLEDEYQNLFIGVGRGEVMQFGSWHIAGALMEKPLVALRQDLMQLGFERAEDVKE HHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PEDHISALCEVMAMLIEAGEAEVLQQRFFNRHIQPWYVSLCDQINNAQNADFYKSVACLA HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH EAFFTVEQTRFAKNPNEIEVTAI HHHHHHHHHHHCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA