Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694883
Identifier: 209694883
GI number: 209694883
Start: 1472721
End: 1473107
Strand: Direct
Name: 209694883
Synonym: VSAL_I1354
Alternate gene names: NA
Gene position: 1472721-1473107 (Clockwise)
Preceding gene: 209694882
Following gene: 209694885
Centisome position: 44.29
GC content: 39.79
Gene sequence:
>387_bases ATGAGCCAACTAGATCAACAAACAATAGAAAAAATCGTAAATTCTCATGAAGAAGAGCGTTTTACTTACTTTATGAAAGA AGTTGTCGCTAATCGTGAAATTTGGATTTTGACTGATGAACACGGTTGTGTGATGTTGAATACCGAAGAAGAAGATTGCG TTCCAGTGTGGCCAAACAAAGAATTTGCTGAAGCGTGGGCAACGGGCGAGTGGGATGTATGTAAAGCAGAATCTATCTCT CTAAACAAATGGCACAGCCGTTGGACTACCGGTCTAGAAGACGATGAACTGGCCGTTGTTGTTTTCCCAAATCAAAACGA AGAAGGGCAAGTGCTTTTCCCTGATGAATTCGATTTTGAATTAACAAAACAAGAAAGAAAGCGTTAA
Upstream 100 bases:
>100_bases ATTTATGCCTTACTCTAATCGATTTTTCCTACGCAATTATCTGCTCAACTACTTATCCAGATTGGTATAATATAATCTTT CCCACTGATAGGAATTGGTA
Downstream 100 bases:
>100_bases TTTTTTATCTGCCTAGATATTAAATACAGAGACATATAAAAATGGCGACTCAAATAAGAGTCGCCATTTTTTGTATTTTC GCTAAACAAGCGTGTGAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MSQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNKEFAEAWATGEWDVCKAESIS LNKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFELTKQERKR
Sequences:
>Translated_128_residues MSQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNKEFAEAWATGEWDVCKAESIS LNKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFELTKQERKR >Mature_127_residues SQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNKEFAEAWATGEWDVCKAESISL NKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFELTKQERKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15170; Mature: 15039
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNK CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCEECCCCH EFAEAWATGEWDVCKAESISLNKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFE HHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCEECCCCCCCE LTKQERKR ECHHHCCC >Mature Secondary Structure SQLDQQTIEKIVNSHEEERFTYFMKEVVANREIWILTDEHGCVMLNTEEEDCVPVWPNK CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCEECCCCH EFAEAWATGEWDVCKAESISLNKWHSRWTTGLEDDELAVVVFPNQNEEGQVLFPDEFDFE HHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCEECCCCCCCE LTKQERKR ECHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA