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The map label for this gene is ycbK [H]

Identifier: 209694859

GI number: 209694859

Start: 1440531

End: 1441082

Strand: Direct

Name: ycbK [H]

Synonym: VSAL_I1328

Alternate gene names: 209694859

Gene position: 1440531-1441082 (Clockwise)

Preceding gene: 209694858

Following gene: 209694861

Centisome position: 43.32

GC content: 38.22

Gene sequence:

>552_bases
ATGCCTGAATTTGATTCGTTACGCCGTAAAATTCTTCTTGGTGGCGTTGCCACTGTTGGTTTAAGTTTATTCCCATCGAT
TTCTTTTGCGTCACAGTTTGCTGAATCTCCTAGAGAATTGGCGTTTAAGAATTTACATACTGGTGAGAAACTGCAAAGCG
AATATTTTAATGGACAACAATATTCAAATTCTGAGTTACTTAAATTAAATCATTTATGTCGTGATTTTCGTCGAAATGAA
ACGATAGATATGGATACTGGGTTATTTGATCAATTATCGGCTATTCAAAAAGTAATTGGTTGTGATACCCAAGTGCAAAT
CATTTCTGGTTATCGCTCACCAGCAACCAATGAAATGTTGCGTGGTAAATCACATGGTGGTGTAGCGAAGAAAAGTTTGC
ATATGCTAGGTAAAGCCATGGATTTCCGTTTAGAAGACGTGCCATTAATCGAAGTAAGAAAAGCGGCCTTATCATTAAAA
GCGGGCGGAGTAGGGTATTATCCTGGCAGTAACTTTGTTCATATCGATACGGGACGAGTTCGTTTCTGGTAA

Upstream 100 bases:

>100_bases
GAATAAAATTAGCATTGTTCATTATTTGACCAAGTTAACGTAGGTGTGTATCTTTGCGCTCAGTTATTGATTCATCTATC
TATAAGTGAGTTGTTTTTAC

Downstream 100 bases:

>100_bases
TTCCTCGGTATTTAAAAATAACAAACATAAAAAATGGCGACCATTATGGTCGCCATTTTTGTATTCATTGCTTTCTATTG
AACGAATTCTTACAAAGCTG

Product: membrane associated peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MPEFDSLRRKILLGGVATVGLSLFPSISFASQFAESPRELAFKNLHTGEKLQSEYFNGQQYSNSELLKLNHLCRDFRRNE
TIDMDTGLFDQLSAIQKVIGCDTQVQIISGYRSPATNEMLRGKSHGGVAKKSLHMLGKAMDFRLEDVPLIEVRKAALSLK
AGGVGYYPGSNFVHIDTGRVRFW

Sequences:

>Translated_183_residues
MPEFDSLRRKILLGGVATVGLSLFPSISFASQFAESPRELAFKNLHTGEKLQSEYFNGQQYSNSELLKLNHLCRDFRRNE
TIDMDTGLFDQLSAIQKVIGCDTQVQIISGYRSPATNEMLRGKSHGGVAKKSLHMLGKAMDFRLEDVPLIEVRKAALSLK
AGGVGYYPGSNFVHIDTGRVRFW
>Mature_182_residues
PEFDSLRRKILLGGVATVGLSLFPSISFASQFAESPRELAFKNLHTGEKLQSEYFNGQQYSNSELLKLNHLCRDFRRNET
IDMDTGLFDQLSAIQKVIGCDTQVQIISGYRSPATNEMLRGKSHGGVAKKSLHMLGKAMDFRLEDVPLIEVRKAALSLKA
GGVGYYPGSNFVHIDTGRVRFW

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=184, Percent_Identity=54.3478260869565, Blast_Score=195, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 20444; Mature: 20313

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEFDSLRRKILLGGVATVGLSLFPSISFASQFAESPRELAFKNLHTGEKLQSEYFNGQQ
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCC
YSNSELLKLNHLCRDFRRNETIDMDTGLFDQLSAIQKVIGCDTQVQIISGYRSPATNEML
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
RGKSHGGVAKKSLHMLGKAMDFRLEDVPLIEVRKAALSLKAGGVGYYPGSNFVHIDTGRV
CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCCCE
RFW
ECC
>Mature Secondary Structure 
PEFDSLRRKILLGGVATVGLSLFPSISFASQFAESPRELAFKNLHTGEKLQSEYFNGQQ
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCCC
YSNSELLKLNHLCRDFRRNETIDMDTGLFDQLSAIQKVIGCDTQVQIISGYRSPATNEML
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
RGKSHGGVAKKSLHMLGKAMDFRLEDVPLIEVRKAALSLKAGGVGYYPGSNFVHIDTGRV
CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCCCE
RFW
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]