Click here to switch to the map view.

The map label for this gene is ycbB [H]

Identifier: 209694858

GI number: 209694858

Start: 1438827

End: 1440365

Strand: Direct

Name: ycbB [H]

Synonym: VSAL_I1327

Alternate gene names: 209694858

Gene position: 1438827-1440365 (Clockwise)

Preceding gene: 209694857

Following gene: 209694859

Centisome position: 43.27

GC content: 34.44

Gene sequence:

>1539_bases
ATGAGTCGATATATTGTTTTTTTTACACTTCTTTTTTGTTATTTTCCCCTATCTGCTCAAACGGAAGACGCTGATACTTA
CATAAGAAAGCATCAAGGTTCGCTGTATTATGCTTCAGATGTGTCTCGTTTATATCCAAACTCTCAACGTAAATGGAATC
GTGCCGAGGATAGAAAAGAAATAGAGACTCAATTCGCACTTCTTATTCTTGCTGACGTGAATAATTCTTTAGCTAAAAGA
TACGAAAATTTACAGAATACAGAAGGGCTTGAATACGATGTTTTAGCAACAGACACGTTACTATATATGCTTACTTATCA
ATCATTAATATCAAAGTATGGTACTCGATGGTTATTTGGTGGACGGTTAGATAATAATATTGGAAAACCGTCTTTATTTC
TTATTGAAAAAGTAAATCAACATTTTGAAGACGATACATTAACGGCGTTAGTGAATCAGTTAAAACCTCAATCGAAACAA
TATCAAGATTTATACACACGATTATATCGTTATTATGATCCTTATCATCAAGAAGCCCCAAAACTATATTCCTCACGATT
ATTGAAACCGAATCAAGACATTCCATATAAATCACTTGTATATAGATTGCAAATATCAGGGGAATTAAATGAAGAACAAA
TCCACTATTTTTTGAGCCAAGAAGGGGATAAATATAATAATGAATTAGTTAATGTGGTTAAGTCATTTCAAAAACGACAT
GGTTTAGTCGTGGATGGTATTGTCGGTAAGAGAACATTGTATTGGCTAAATATGAGTGCGAATGAACGTGTACGAATTAT
GGCATTAAATATTCAGCGTTTACGTTTATGGGAAAATAAGAACGCTCGATTTGTTCTCGTAAATATACCTTCTTATGAAA
TGGGGTATTGGTTGAAAGGTGAGCTTGTTTTTAAAAGTAAAGTGATCGTAGGTAAGCCCGAAAGAAAAACCCCGCTCTTT
ACTACTCGATTAGACTCCATCGTATTTAATCCTAATTGGAAAGTGCCAACAAAGATAATGAAGGAGGATATCCTACCAAA
AGCCCTTGAGAATCAAGACTATTTATTAACGCATAATTATGAAGTGCTTCCATCTTGGTTAAGTGATGAAGTGATTCCTT
TTGAAAGCATTGAATGGGAGACAATGACCGTTGATAATTTTCCTTATAAATTAAGACAAAAGTCGGGCAACGCAAATGCA
TTAGGTCGCTATAAATTTAATACACCAAACCGTAATGCTATCTATCTGCATGATACTCCATCACGATCTTTATTTAATAA
ACAACATCGTGCTTACAGTTCAGGGTGTATACGGGTAGAGAAAGCGTCAGAATTTGCACAACTTTTAATGAAAGAATCGC
ATTTTACCGCGAAAGATTATGCAGGCTATCATCGATTACCAAAAACAAATACGGTAGGGTTATCGCAAAAAATAGCGGTA
TATACCATTTATCAAACCGCGTGGGTAGATGAAGCGGACACCATTCAATTTAGAAATGACGTATATCGATATGATGAATG
GAGTAAGAGTAAAAATTGA

Upstream 100 bases:

>100_bases
ATAAGCCTTATATCTAATGATTTTATAGTAAGAGTGAAACTTGCTATTCATCACCTTGAGTCTATTATCAAAAGAGGACT
TAATATTTAAGGGGTGATAA

Downstream 100 bases:

>100_bases
CCTACTTTTTACATAGCCATAAAAACGTTATAGCTCAATAAGTAAGCACCATTAATCAGTGCAGCGAATAAAATTAGCAT
TGTTCATTATTTGACCAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MSRYIVFFTLLFCYFPLSAQTEDADTYIRKHQGSLYYASDVSRLYPNSQRKWNRAEDRKEIETQFALLILADVNNSLAKR
YENLQNTEGLEYDVLATDTLLYMLTYQSLISKYGTRWLFGGRLDNNIGKPSLFLIEKVNQHFEDDTLTALVNQLKPQSKQ
YQDLYTRLYRYYDPYHQEAPKLYSSRLLKPNQDIPYKSLVYRLQISGELNEEQIHYFLSQEGDKYNNELVNVVKSFQKRH
GLVVDGIVGKRTLYWLNMSANERVRIMALNIQRLRLWENKNARFVLVNIPSYEMGYWLKGELVFKSKVIVGKPERKTPLF
TTRLDSIVFNPNWKVPTKIMKEDILPKALENQDYLLTHNYEVLPSWLSDEVIPFESIEWETMTVDNFPYKLRQKSGNANA
LGRYKFNTPNRNAIYLHDTPSRSLFNKQHRAYSSGCIRVEKASEFAQLLMKESHFTAKDYAGYHRLPKTNTVGLSQKIAV
YTIYQTAWVDEADTIQFRNDVYRYDEWSKSKN

Sequences:

>Translated_512_residues
MSRYIVFFTLLFCYFPLSAQTEDADTYIRKHQGSLYYASDVSRLYPNSQRKWNRAEDRKEIETQFALLILADVNNSLAKR
YENLQNTEGLEYDVLATDTLLYMLTYQSLISKYGTRWLFGGRLDNNIGKPSLFLIEKVNQHFEDDTLTALVNQLKPQSKQ
YQDLYTRLYRYYDPYHQEAPKLYSSRLLKPNQDIPYKSLVYRLQISGELNEEQIHYFLSQEGDKYNNELVNVVKSFQKRH
GLVVDGIVGKRTLYWLNMSANERVRIMALNIQRLRLWENKNARFVLVNIPSYEMGYWLKGELVFKSKVIVGKPERKTPLF
TTRLDSIVFNPNWKVPTKIMKEDILPKALENQDYLLTHNYEVLPSWLSDEVIPFESIEWETMTVDNFPYKLRQKSGNANA
LGRYKFNTPNRNAIYLHDTPSRSLFNKQHRAYSSGCIRVEKASEFAQLLMKESHFTAKDYAGYHRLPKTNTVGLSQKIAV
YTIYQTAWVDEADTIQFRNDVYRYDEWSKSKN
>Mature_511_residues
SRYIVFFTLLFCYFPLSAQTEDADTYIRKHQGSLYYASDVSRLYPNSQRKWNRAEDRKEIETQFALLILADVNNSLAKRY
ENLQNTEGLEYDVLATDTLLYMLTYQSLISKYGTRWLFGGRLDNNIGKPSLFLIEKVNQHFEDDTLTALVNQLKPQSKQY
QDLYTRLYRYYDPYHQEAPKLYSSRLLKPNQDIPYKSLVYRLQISGELNEEQIHYFLSQEGDKYNNELVNVVKSFQKRHG
LVVDGIVGKRTLYWLNMSANERVRIMALNIQRLRLWENKNARFVLVNIPSYEMGYWLKGELVFKSKVIVGKPERKTPLFT
TRLDSIVFNPNWKVPTKIMKEDILPKALENQDYLLTHNYEVLPSWLSDEVIPFESIEWETMTVDNFPYKLRQKSGNANAL
GRYKFNTPNRNAIYLHDTPSRSLFNKQHRAYSSGCIRVEKASEFAQLLMKESHFTAKDYAGYHRLPKTNTVGLSQKIAVY
TIYQTAWVDEADTIQFRNDVYRYDEWSKSKN

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=516, Percent_Identity=32.7519379844961, Blast_Score=280, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 60403; Mature: 60272

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYIVFFTLLFCYFPLSAQTEDADTYIRKHQGSLYYASDVSRLYPNSQRKWNRAEDRKE
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEECCHHHHCCCCCCCCCHHHHHHH
IETQFALLILADVNNSLAKRYENLQNTEGLEYDVLATDTLLYMLTYQSLISKYGTRWLFG
HHHHEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEC
GRLDNNIGKPSLFLIEKVNQHFEDDTLTALVNQLKPQSKQYQDLYTRLYRYYDPYHQEAP
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHH
KLYSSRLLKPNQDIPYKSLVYRLQISGELNEEQIHYFLSQEGDKYNNELVNVVKSFQKRH
HHHHHHCCCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
GLVVDGIVGKRTLYWLNMSANERVRIMALNIQRLRLWENKNARFVLVNIPSYEMGYWLKG
CEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEEE
ELVFKSKVIVGKPERKTPLFTTRLDSIVFNPNWKVPTKIMKEDILPKALENQDYLLTHNY
EEEEEEEEEECCCCCCCCEEEEECCEEEECCCCCCCHHHHHHHCCHHHHCCCCEEEECCC
EVLPSWLSDEVIPFESIEWETMTVDNFPYKLRQKSGNANALGRYKFNTPNRNAIYLHDTP
CCCCHHCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEECCCCCCEEEEECCC
SRSLFNKQHRAYSSGCIRVEKASEFAQLLMKESHFTAKDYAGYHRLPKTNTVGLSQKIAV
CHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCEEE
YTIYQTAWVDEADTIQFRNDVYRYDEWSKSKN
EEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SRYIVFFTLLFCYFPLSAQTEDADTYIRKHQGSLYYASDVSRLYPNSQRKWNRAEDRKE
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEECCHHHHCCCCCCCCCHHHHHHH
IETQFALLILADVNNSLAKRYENLQNTEGLEYDVLATDTLLYMLTYQSLISKYGTRWLFG
HHHHEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEC
GRLDNNIGKPSLFLIEKVNQHFEDDTLTALVNQLKPQSKQYQDLYTRLYRYYDPYHQEAP
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHH
KLYSSRLLKPNQDIPYKSLVYRLQISGELNEEQIHYFLSQEGDKYNNELVNVVKSFQKRH
HHHHHHCCCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
GLVVDGIVGKRTLYWLNMSANERVRIMALNIQRLRLWENKNARFVLVNIPSYEMGYWLKG
CEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEEECCCCCCCEEEEE
ELVFKSKVIVGKPERKTPLFTTRLDSIVFNPNWKVPTKIMKEDILPKALENQDYLLTHNY
EEEEEEEEEECCCCCCCCEEEEECCEEEECCCCCCCHHHHHHHCCHHHHCCCCEEEECCC
EVLPSWLSDEVIPFESIEWETMTVDNFPYKLRQKSGNANALGRYKFNTPNRNAIYLHDTP
CCCCHHCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEEECCCCCCEEEEECCC
SRSLFNKQHRAYSSGCIRVEKASEFAQLLMKESHFTAKDYAGYHRLPKTNTVGLSQKIAV
CHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCEEE
YTIYQTAWVDEADTIQFRNDVYRYDEWSKSKN
EEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]