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The map label for this gene is yfcH [H]

Identifier: 209694388

GI number: 209694388

Start: 895887

End: 896792

Strand: Reverse

Name: yfcH [H]

Synonym: VSAL_I0806

Alternate gene names: 209694388

Gene position: 896792-895887 (Counterclockwise)

Preceding gene: 209694393

Following gene: 209694387

Centisome position: 26.97

GC content: 37.86

Gene sequence:

>906_bases
ATGAAAATACTAATTACAGGCAGTACCGGGTTAATAGGAAAAAAATTATTAGACCATTTAAAAGGTCATCATTTAGTCTT
ACTTACTCGTAATATAAAAAAAGCACAAACAGCATTAAATCATTTAGCATTACCTCATGCTGACTTCATTTCTGATCTGT
CTACGCTTTCTCATTTAAATGATTTTGATACCATCATCAATTTGGCGGGAGAACCCATTGCCGATAAAAAATGGACCAAC
AAACAAAAAAGAACCATTTTAGATAGCCGTTGTGAGCTAACCCATGCATTAACTCAATTGTGTTTGGCGTCTTCAACGCC
ACCTCGTTGTTTTATTTCTGGCTCTGCAGTGGGTTATTATTCGGATCAAGGAAGCAACGACATTGATGAATCAACCGTTA
TCTCTAGTAATGATTTCGCTCATCGTGTTTGTAAAGAGTGGGAAGACGTTGCCTTAAAAGCAAACAATGAAGGTACACGG
GTCTGTATACTCAGAACAGGCGTTGTTTTAGCAACATCAGGCGGAGCTCTTAAGAAAATGCTTTTGCCTTATCAATGTGG
TGTTGGCGGCCCAATAGGTAAAGGCGCACAATATATGTCATGGATTCATATTGATGATATGGTTTATGCAATCTTATTTC
TATTAGAGCACGAGAAAAGTCAGGGTATTTATAACCTCACTGCCCCACACCCTGTCACTAATAAAGAGTTTAGCCAAACG
CTCGCAAGTACATTAAAACGACCACATTTATTAGTAACACCAACGTTAGTGATAAAAATTCTTTTAGGAGAAGCTTCTGT
GCTTCTTACGGATAGTCAACGGATTAGACCTAAACGACTCGTAAACGAAGGATTTAAGTTCCGTTACTCTAGGATTGAAT
CAGCATTAAAGCATCTTTTAGGCTAA

Upstream 100 bases:

>100_bases
CGAGATTAATTATAAAGGAAAATTACATGAAAGTTGCCAATCAATAAACTCGATTTATACTTAGGCTATTGGATGTTCGA
AATATCTTGCAGGAAACGAG

Downstream 100 bases:

>100_bases
ACCATTACCATTCCTCTCATTGCAATATCGTCATTTTGACGTCATTATTTTCTTTCTTAGTTTGGTTTTTATCGACTTAC
ATGGGTAGTTACATCAGTAA

Product: NAD dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKILITGSTGLIGKKLLDHLKGHHLVLLTRNIKKAQTALNHLALPHADFISDLSTLSHLNDFDTIINLAGEPIADKKWTN
KQKRTILDSRCELTHALTQLCLASSTPPRCFISGSAVGYYSDQGSNDIDESTVISSNDFAHRVCKEWEDVALKANNEGTR
VCILRTGVVLATSGGALKKMLLPYQCGVGGPIGKGAQYMSWIHIDDMVYAILFLLEHEKSQGIYNLTAPHPVTNKEFSQT
LASTLKRPHLLVTPTLVIKILLGEASVLLTDSQRIRPKRLVNEGFKFRYSRIESALKHLLG

Sequences:

>Translated_301_residues
MKILITGSTGLIGKKLLDHLKGHHLVLLTRNIKKAQTALNHLALPHADFISDLSTLSHLNDFDTIINLAGEPIADKKWTN
KQKRTILDSRCELTHALTQLCLASSTPPRCFISGSAVGYYSDQGSNDIDESTVISSNDFAHRVCKEWEDVALKANNEGTR
VCILRTGVVLATSGGALKKMLLPYQCGVGGPIGKGAQYMSWIHIDDMVYAILFLLEHEKSQGIYNLTAPHPVTNKEFSQT
LASTLKRPHLLVTPTLVIKILLGEASVLLTDSQRIRPKRLVNEGFKFRYSRIESALKHLLG
>Mature_301_residues
MKILITGSTGLIGKKLLDHLKGHHLVLLTRNIKKAQTALNHLALPHADFISDLSTLSHLNDFDTIINLAGEPIADKKWTN
KQKRTILDSRCELTHALTQLCLASSTPPRCFISGSAVGYYSDQGSNDIDESTVISSNDFAHRVCKEWEDVALKANNEGTR
VCILRTGVVLATSGGALKKMLLPYQCGVGGPIGKGAQYMSWIHIDDMVYAILFLLEHEKSQGIYNLTAPHPVTNKEFSQT
LASTLKRPHLLVTPTLVIKILLGEASVLLTDSQRIRPKRLVNEGFKFRYSRIESALKHLLG

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=305, Percent_Identity=31.1475409836066, Blast_Score=179, Evalue=3e-45,
Organism=Escherichia coli, GI1788642, Length=302, Percent_Identity=47.682119205298, Blast_Score=288, Evalue=3e-79,
Organism=Drosophila melanogaster, GI28573846, Length=303, Percent_Identity=29.042904290429, Blast_Score=157, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 33229; Mature: 33229

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILITGSTGLIGKKLLDHLKGHHLVLLTRNIKKAQTALNHLALPHADFISDLSTLSHLN
CEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DFDTIINLAGEPIADKKWTNKQKRTILDSRCELTHALTQLCLASSTPPRCFISGSAVGYY
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEE
SDQGSNDIDESTVISSNDFAHRVCKEWEDVALKANNEGTRVCILRTGVVLATSGGALKKM
CCCCCCCCCCCCEECCCHHHHHHHHHHHHEEEEECCCCCEEEEEECCEEEEECCCHHHHH
LLPYQCGVGGPIGKGAQYMSWIHIDDMVYAILFLLEHEKSQGIYNLTAPHPVTNKEFSQT
HCCCCCCCCCCCCCCCHHHEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
LASTLKRPHLLVTPTLVIKILLGEASVLLTDSQRIRPKRLVNEGFKFRYSRIESALKHLL
HHHHHCCCEEEECHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
G
C
>Mature Secondary Structure
MKILITGSTGLIGKKLLDHLKGHHLVLLTRNIKKAQTALNHLALPHADFISDLSTLSHLN
CEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
DFDTIINLAGEPIADKKWTNKQKRTILDSRCELTHALTQLCLASSTPPRCFISGSAVGYY
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEE
SDQGSNDIDESTVISSNDFAHRVCKEWEDVALKANNEGTRVCILRTGVVLATSGGALKKM
CCCCCCCCCCCCEECCCHHHHHHHHHHHHEEEEECCCCCEEEEEECCEEEEECCCHHHHH
LLPYQCGVGGPIGKGAQYMSWIHIDDMVYAILFLLEHEKSQGIYNLTAPHPVTNKEFSQT
HCCCCCCCCCCCCCCCHHHEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH
LASTLKRPHLLVTPTLVIKILLGEASVLLTDSQRIRPKRLVNEGFKFRYSRIESALKHLL
HHHHHCCCEEEECHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]