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The map label for this gene is ybbN [H]

Identifier: 209694386

GI number: 209694386

Start: 893742

End: 894596

Strand: Reverse

Name: ybbN [H]

Synonym: VSAL_I0804

Alternate gene names: 209694386

Gene position: 894596-893742 (Counterclockwise)

Preceding gene: 209694387

Following gene: 209694384

Centisome position: 26.9

GC content: 39.18

Gene sequence:

>855_bases
ATGCAGTCAGAACACAGCGTTGAACTTAACGAACAAAACTTCCAACAAATTCTTGAAGGCTCAACCCAGACTCCTGTCTT
AATTCACTTCTGGGCACCAATGAGTCAAGAAAGCATTACGGTTATTCCTGCACTACAACAACTTGCTCAGCAATACGGAG
ACGCGGTTACTCTTGTTTTATTAAACTGCGAAGAACAGCAAGGCCTTGCTCAGCAATTTGGCGTTCAAACGCTTCCAACT
ATCGCCCTATTTAAAAGTGGCCAAGCCATTGATGGAATGGGTGGCCCCCAATCAATTGATGCAATACTAGGAATGTTAGA
TAAACACCTACCAAGCCAAGAAGAATTACAATTAGGCCAAGCATTTAAGTTAGTCGAAGAAGGCAATTACCAAAGCGCTC
TCCCTATCCTATTGGCTTTACTTGAACATTTTGGTGGTAATGGTCAAATCAAATTACATATCGCGCAGTGTTACATTGAA
ACACAATCTTATGAACAAGCTGAAACCATCTTGTCTGAGATATTAATGCAAGATCAAGACAGCAAATACAAAGAACTAAT
TGCAAAGCTTCAACTGCATAAACAAGCCGGTAATACGCCAGAAATTCAAGCCTTAGAAGATCAATACAAAGCCGATACAA
CCAATAATGAAATCGCTTTAGAATTGGCAATTCAATACAGCCAAGTTAATCGACAAGAAGAAGCTCTAGATATCTTAATT
GCGATTTTATTAAAAGATCTCAATGCTGAAGATGGGCAAGTTAAAAAAACCATGATGGATATTCTGTCTGCTCTTGGTCA
AGGTAACCCTATTGCAGGAAAATACCGTCGCCAGTTGTACTCATTACTTTATTAA

Upstream 100 bases:

>100_bases
AGCATAGTGGCTTTCTTCGTATCTGGCGCCTTGAAAATCTATCCTAAACCCCATATAACTGTATATATCTATATAGAAAA
TACTATTTTAGGAAAAAACC

Downstream 100 bases:

>100_bases
TCAATAGTTGAGAATCGCCTGTTGTTATTTATTATGGCAACAGGTTAATCCTTTGATTATTGGACAATCATGACTTTCAT
CTCCAGGGCACGCATTAGCA

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MQSEHSVELNEQNFQQILEGSTQTPVLIHFWAPMSQESITVIPALQQLAQQYGDAVTLVLLNCEEQQGLAQQFGVQTLPT
IALFKSGQAIDGMGGPQSIDAILGMLDKHLPSQEELQLGQAFKLVEEGNYQSALPILLALLEHFGGNGQIKLHIAQCYIE
TQSYEQAETILSEILMQDQDSKYKELIAKLQLHKQAGNTPEIQALEDQYKADTTNNEIALELAIQYSQVNRQEEALDILI
AILLKDLNAEDGQVKKTMMDILSALGQGNPIAGKYRRQLYSLLY

Sequences:

>Translated_284_residues
MQSEHSVELNEQNFQQILEGSTQTPVLIHFWAPMSQESITVIPALQQLAQQYGDAVTLVLLNCEEQQGLAQQFGVQTLPT
IALFKSGQAIDGMGGPQSIDAILGMLDKHLPSQEELQLGQAFKLVEEGNYQSALPILLALLEHFGGNGQIKLHIAQCYIE
TQSYEQAETILSEILMQDQDSKYKELIAKLQLHKQAGNTPEIQALEDQYKADTTNNEIALELAIQYSQVNRQEEALDILI
AILLKDLNAEDGQVKKTMMDILSALGQGNPIAGKYRRQLYSLLY
>Mature_284_residues
MQSEHSVELNEQNFQQILEGSTQTPVLIHFWAPMSQESITVIPALQQLAQQYGDAVTLVLLNCEEQQGLAQQFGVQTLPT
IALFKSGQAIDGMGGPQSIDAILGMLDKHLPSQEELQLGQAFKLVEEGNYQSALPILLALLEHFGGNGQIKLHIAQCYIE
TQSYEQAETILSEILMQDQDSKYKELIAKLQLHKQAGNTPEIQALEDQYKADTTNNEIALELAIQYSQVNRQEEALDILI
AILLKDLNAEDGQVKKTMMDILSALGQGNPIAGKYRRQLYSLLY

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI87081747, Length=284, Percent_Identity=46.4788732394366, Blast_Score=255, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31595; Mature: 31595

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSEHSVELNEQNFQQILEGSTQTPVLIHFWAPMSQESITVIPALQQLAQQYGDAVTLVL
CCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEE
LNCEEQQGLAQQFGVQTLPTIALFKSGQAIDGMGGPQSIDAILGMLDKHLPSQEELQLGQ
EECCHHHHHHHHCCCHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
AFKLVEEGNYQSALPILLALLEHFGGNGQIKLHIAQCYIETQSYEQAETILSEILMQDQD
HHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCC
SKYKELIAKLQLHKQAGNTPEIQALEDQYKADTTNNEIALELAIQYSQVNRQEEALDILI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHH
AILLKDLNAEDGQVKKTMMDILSALGQGNPIAGKYRRQLYSLLY
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
>Mature Secondary Structure
MQSEHSVELNEQNFQQILEGSTQTPVLIHFWAPMSQESITVIPALQQLAQQYGDAVTLVL
CCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEE
LNCEEQQGLAQQFGVQTLPTIALFKSGQAIDGMGGPQSIDAILGMLDKHLPSQEELQLGQ
EECCHHHHHHHHCCCHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
AFKLVEEGNYQSALPILLALLEHFGGNGQIKLHIAQCYIETQSYEQAETILSEILMQDQD
HHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCC
SKYKELIAKLQLHKQAGNTPEIQALEDQYKADTTNNEIALELAIQYSQVNRQEEALDILI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHH
AILLKDLNAEDGQVKKTMMDILSALGQGNPIAGKYRRQLYSLLY
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]