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The map label for this gene is recD [H]

Identifier: 209694271

GI number: 209694271

Start: 764777

End: 766801

Strand: Direct

Name: recD [H]

Synonym: VSAL_I0682

Alternate gene names: 209694271

Gene position: 764777-766801 (Clockwise)

Preceding gene: 209694270

Following gene: 209694275

Centisome position: 23.0

GC content: 43.01

Gene sequence:

>2025_bases
ATGCTTAAGCAATTACAACACTTAATGGCTCATGGTGTACTTCGCCCATTGGATCTTCAATTTGCTAAGTTTTTAGGCCA
ACAGGAAAAGAACAGCGATAAAAACTTAATCATGTTGCTCGCAGCAATGACTAGCCATGAGTTAGGTAAAGGCCATGTGT
GTATTGATATCGAGCAAGTAGAGCAAGGTGATCTGTTTACGTTGCCTGCAAAATATCGTGATGCATTGTTAGCGTTAGTA
CCAGAGAAAAATCAGTGGATTAGTGAGTTATCTGCGGCATCGACGATATCTAATGGCACAGAAGCAACGCCACTAGCCTT
TGATGGAACTCGTTTGTATTTACAACGTTATTGGTCGTTTGAACAGCGTGTTGCCAACCGTATAACTAAAGCGGCGCAAA
GTGTGGCGGTAAACGCTCAGTTATCGAATACATTGGATGAGCTATTTGCTCGCCAATACCATTTTTTATTCAGTGGGCTT
AAAAAATTAGAGAATAATAATCAAGTATCTCGTCAGCAATTAGTGTGCGATATGCTCGATGTTGTGGGATCTAGTTCTAG
TGAGTTAGATTGGCAAGCGATTGATGGGGTTTTACTCTCAGCCACTAAGTCTTCAGAATTAGAGCCGCTGGATAACTTAA
TCCCAACCAAACACTGTGTGAATTGGCAGAAAGTTGCGGCAGCGGTAGCGTTAACTCGTCGATTCTCGGTGATCTCTGGT
GGTCCAGGAACGGGTAAAACAACCACGGTTACCAAGCTTTTGGCTTCCCTAGTGACTCAAGCTCAGCAAGATAATAAAAG
CATCGCAATTAAGTTAGTTGCTCCAACGGGTAAAGCGGCAGCGCGTTTGACTGAATCCATTGGTCAAGCGGTGCAATCTA
TTGGTTTAGCACCAGAAGTAAAAGAAGCGATCCCGACAGACGCAAGTACGCTGCATCGCTTGCTTGGTTATATTCCAAAC
CAAGTGGATTTTCGTCATAACAAAAGCAATCCATTACACCTTGATGTATTGGTGGTGGATGAAGCCTCGATGGTCGATTT
ACCTATGATGGCCCGACTACTCGATGCGGTACCAGAACACGCGCGTGTTATTTTATTGGGCGATAAAGATCAGCTAGCCT
CGGTTGAAGCGGGAGCGGTGTTAGGTGATATCTGTCAATTTACTAAAATGGGTTACAGCCAGAATCAAGCACAACAATTA
TCTCAATTAACAGGCTATGCTTTGCCTGTGCAATCGCACAATAACGCGGTCGCCGATAGCTTGTGTATGCTGCAAAAGAG
TTACCGTTTTGATGCGCGCTCAGGGATTGGACAATTAGCTAAAGCCATTAATGAAGGCTGTAAATTTAAAGTAGAAGCGG
TGTGGGCCAAAGGGTTCTCTGATATTCGTTTTCATGATTTAAGTAATGACAGCTATAACGCAATGATCACCATGATGGTG
AATGGCTATCGCAGTTATTTAGGTCATATCCATGCGGGCGATAAACCAGAAGTGGCACTAAAAGCCTTTAGCCAAATTCA
ATTATTGTGTGCAATGCGCGAAGGGGACTTTGGGGTTGTAGGACTTAATCAACGAATTGAAAAAGGATTAAGAAAATCTG
ATTTGATTCCTCATGGTGATGAAGTGTGGTATTCCGGTCGCCCGGTGATGGTGACTCAAAATGATTATGGCGTAGGTCTT
TATAATGGTGATATTGGTATTGCGATGCCAGATCCTGTTGATCAACGTTTACGTGTTTATTTTGATATGCCAGATGGTTC
GATTCGTGGAGTATTACCAAGTCAATTACCAGAGCATGAAACCGTGTATGCGATGACGATTCATAAATCTCAAGGGTCTG
AGTTTGAACATACAGTTTTAGCTTTACCTGCTGAGTTCAGCCCAATCTTAACGCGAGAGTTGATTTATACGGGTGTCACA
CGAGCTAAGAAAAAACTCGATCTGTTCGCAACAGAGAAAGTGGTGGCGAGAGGTGTAATGATTAAAACTCAGAGAAACAG
TGGATTAGCTGCGTTGATGAGCTAA

Upstream 100 bases:

>100_bases
CATGAGGGGCATGATAGCAATTCAAATGGGGTCTTTTATTCAAAACCAAGTGAAGTGTTATTAGAAGAATTAGAGCAATT
GGTAAATGGAGAAACAGTCG

Downstream 100 bases:

>100_bases
ATAAATACAGTGATTAACCTTAATATATTTGATGATATTGAGGATTTCATTATTAATATTGATTACGAGATTATATTTGT
AGCCTATTTTTATGCTGCTA

Product: exodeoxyribonuclease V alpha chain

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 674; Mature: 674

Protein sequence:

>674_residues
MLKQLQHLMAHGVLRPLDLQFAKFLGQQEKNSDKNLIMLLAAMTSHELGKGHVCIDIEQVEQGDLFTLPAKYRDALLALV
PEKNQWISELSAASTISNGTEATPLAFDGTRLYLQRYWSFEQRVANRITKAAQSVAVNAQLSNTLDELFARQYHFLFSGL
KKLENNNQVSRQQLVCDMLDVVGSSSSELDWQAIDGVLLSATKSSELEPLDNLIPTKHCVNWQKVAAAVALTRRFSVISG
GPGTGKTTTVTKLLASLVTQAQQDNKSIAIKLVAPTGKAAARLTESIGQAVQSIGLAPEVKEAIPTDASTLHRLLGYIPN
QVDFRHNKSNPLHLDVLVVDEASMVDLPMMARLLDAVPEHARVILLGDKDQLASVEAGAVLGDICQFTKMGYSQNQAQQL
SQLTGYALPVQSHNNAVADSLCMLQKSYRFDARSGIGQLAKAINEGCKFKVEAVWAKGFSDIRFHDLSNDSYNAMITMMV
NGYRSYLGHIHAGDKPEVALKAFSQIQLLCAMREGDFGVVGLNQRIEKGLRKSDLIPHGDEVWYSGRPVMVTQNDYGVGL
YNGDIGIAMPDPVDQRLRVYFDMPDGSIRGVLPSQLPEHETVYAMTIHKSQGSEFEHTVLALPAEFSPILTRELIYTGVT
RAKKKLDLFATEKVVARGVMIKTQRNSGLAALMS

Sequences:

>Translated_674_residues
MLKQLQHLMAHGVLRPLDLQFAKFLGQQEKNSDKNLIMLLAAMTSHELGKGHVCIDIEQVEQGDLFTLPAKYRDALLALV
PEKNQWISELSAASTISNGTEATPLAFDGTRLYLQRYWSFEQRVANRITKAAQSVAVNAQLSNTLDELFARQYHFLFSGL
KKLENNNQVSRQQLVCDMLDVVGSSSSELDWQAIDGVLLSATKSSELEPLDNLIPTKHCVNWQKVAAAVALTRRFSVISG
GPGTGKTTTVTKLLASLVTQAQQDNKSIAIKLVAPTGKAAARLTESIGQAVQSIGLAPEVKEAIPTDASTLHRLLGYIPN
QVDFRHNKSNPLHLDVLVVDEASMVDLPMMARLLDAVPEHARVILLGDKDQLASVEAGAVLGDICQFTKMGYSQNQAQQL
SQLTGYALPVQSHNNAVADSLCMLQKSYRFDARSGIGQLAKAINEGCKFKVEAVWAKGFSDIRFHDLSNDSYNAMITMMV
NGYRSYLGHIHAGDKPEVALKAFSQIQLLCAMREGDFGVVGLNQRIEKGLRKSDLIPHGDEVWYSGRPVMVTQNDYGVGL
YNGDIGIAMPDPVDQRLRVYFDMPDGSIRGVLPSQLPEHETVYAMTIHKSQGSEFEHTVLALPAEFSPILTRELIYTGVT
RAKKKLDLFATEKVVARGVMIKTQRNSGLAALMS
>Mature_674_residues
MLKQLQHLMAHGVLRPLDLQFAKFLGQQEKNSDKNLIMLLAAMTSHELGKGHVCIDIEQVEQGDLFTLPAKYRDALLALV
PEKNQWISELSAASTISNGTEATPLAFDGTRLYLQRYWSFEQRVANRITKAAQSVAVNAQLSNTLDELFARQYHFLFSGL
KKLENNNQVSRQQLVCDMLDVVGSSSSELDWQAIDGVLLSATKSSELEPLDNLIPTKHCVNWQKVAAAVALTRRFSVISG
GPGTGKTTTVTKLLASLVTQAQQDNKSIAIKLVAPTGKAAARLTESIGQAVQSIGLAPEVKEAIPTDASTLHRLLGYIPN
QVDFRHNKSNPLHLDVLVVDEASMVDLPMMARLLDAVPEHARVILLGDKDQLASVEAGAVLGDICQFTKMGYSQNQAQQL
SQLTGYALPVQSHNNAVADSLCMLQKSYRFDARSGIGQLAKAINEGCKFKVEAVWAKGFSDIRFHDLSNDSYNAMITMMV
NGYRSYLGHIHAGDKPEVALKAFSQIQLLCAMREGDFGVVGLNQRIEKGLRKSDLIPHGDEVWYSGRPVMVTQNDYGVGL
YNGDIGIAMPDPVDQRLRVYFDMPDGSIRGVLPSQLPEHETVYAMTIHKSQGSEFEHTVLALPAEFSPILTRELIYTGVT
RAKKKLDLFATEKVVARGVMIKTQRNSGLAALMS

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=681, Percent_Identity=46.9897209985316, Blast_Score=550, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 74058; Mature: 74058

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQLQHLMAHGVLRPLDLQFAKFLGQQEKNSDKNLIMLLAAMTSHELGKGHVCIDIEQV
CHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEHHHHCCCCCCCEEEEEEEC
EQGDLFTLPAKYRDALLALVPEKNQWISELSAASTISNGTEATPLAFDGTRLYLQRYWSF
CCCCEEECCHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
EQRVANRITKAAQSVAVNAQLSNTLDELFARQYHFLFSGLKKLENNNQVSRQQLVCDMLD
HHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VVGSSSSELDWQAIDGVLLSATKSSELEPLDNLIPTKHCVNWQKVAAAVALTRRFSVISG
HHCCCCCCCCHHHHCCEEEECCCCCCCCHHHHHCCHHHHCCHHHHHHHHHHHHHHHEEEC
GPGTGKTTTVTKLLASLVTQAQQDNKSIAIKLVAPTGKAAARLTESIGQAVQSIGLAPEV
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHH
KEAIPTDASTLHRLLGYIPNQVDFRHNKSNPLHLDVLVVDEASMVDLPMMARLLDAVPEH
HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCC
ARVILLGDKDQLASVEAGAVLGDICQFTKMGYSQNQAQQLSQLTGYALPVQSHNNAVADS
CEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCHHHHH
LCMLQKSYRFDARSGIGQLAKAINEGCKFKVEAVWAKGFSDIRFHDLSNDSYNAMITMMV
HHHHHHHCCCCHHCCHHHHHHHHCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEH
NGYRSYLGHIHAGDKPEVALKAFSQIQLLCAMREGDFGVVGLNQRIEKGLRKSDLIPHGD
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHCCCCCCCC
EVWYSGRPVMVTQNDYGVGLYNGDIGIAMPDPVDQRLRVYFDMPDGSIRGVLPSQLPEHE
CEEECCCEEEEECCCCEEEEEECCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
TVYAMTIHKSQGSEFEHTVLALPAEFSPILTRELIYTGVTRAKKKLDLFATEKVVARGVM
EEEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
IKTQRNSGLAALMS
EEEECCCCCHHHCC
>Mature Secondary Structure
MLKQLQHLMAHGVLRPLDLQFAKFLGQQEKNSDKNLIMLLAAMTSHELGKGHVCIDIEQV
CHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEHHHHCCCCCCCEEEEEEEC
EQGDLFTLPAKYRDALLALVPEKNQWISELSAASTISNGTEATPLAFDGTRLYLQRYWSF
CCCCEEECCHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH
EQRVANRITKAAQSVAVNAQLSNTLDELFARQYHFLFSGLKKLENNNQVSRQQLVCDMLD
HHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VVGSSSSELDWQAIDGVLLSATKSSELEPLDNLIPTKHCVNWQKVAAAVALTRRFSVISG
HHCCCCCCCCHHHHCCEEEECCCCCCCCHHHHHCCHHHHCCHHHHHHHHHHHHHHHEEEC
GPGTGKTTTVTKLLASLVTQAQQDNKSIAIKLVAPTGKAAARLTESIGQAVQSIGLAPEV
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHH
KEAIPTDASTLHRLLGYIPNQVDFRHNKSNPLHLDVLVVDEASMVDLPMMARLLDAVPEH
HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCC
ARVILLGDKDQLASVEAGAVLGDICQFTKMGYSQNQAQQLSQLTGYALPVQSHNNAVADS
CEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCCCCHHHHH
LCMLQKSYRFDARSGIGQLAKAINEGCKFKVEAVWAKGFSDIRFHDLSNDSYNAMITMMV
HHHHHHHCCCCHHCCHHHHHHHHCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEH
NGYRSYLGHIHAGDKPEVALKAFSQIQLLCAMREGDFGVVGLNQRIEKGLRKSDLIPHGD
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHCCCCCCCC
EVWYSGRPVMVTQNDYGVGLYNGDIGIAMPDPVDQRLRVYFDMPDGSIRGVLPSQLPEHE
CEEECCCEEEEECCCCEEEEEECCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
TVYAMTIHKSQGSEFEHTVLALPAEFSPILTRELIYTGVTRAKKKLDLFATEKVVARGVM
EEEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
IKTQRNSGLAALMS
EEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]