Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
---|---|
Accession | NC_011312 |
Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694266
Identifier: 209694266
GI number: 209694266
Start: 754689
End: 755327
Strand: Direct
Name: 209694266
Synonym: VSAL_I0677
Alternate gene names: NA
Gene position: 754689-755327 (Clockwise)
Preceding gene: 209694261
Following gene: 209694268
Centisome position: 22.7
GC content: 37.25
Gene sequence:
>639_bases ATGATGTCAGATTTTGAACTAAAACATAAAGCGACAACGAAAATGTCAGAGCGTATTGCTTATAAAATTACGCAGTGCTT AAAGTTTCTTTTAAATATTTTTTATGGTTCTCAATATGCAAAGCGTGCCGTTATTTTAGAAACGATTGCTGCGGTTCCTG GGATGGTTGCCGGCATGTTTAATCACCTAAAAGCATTACGTCGTATGAAAGATGATGAAGGGTGGATCCGCGAATTATTG AATGAAGCTGAAAACGAAAGAATGCATTTAATGATATTTTTAGATATTGCAAAACCTCGCTGGATAGAGCGCACGTTGGT TTTATTGGGCCAAGGTGTCTTTATGGTTGTTTATAGCTTTATTTATTTACTCTCATCAAAAGTGGCTCACCGAGTGGTCG GTTATTTTGAAGAAGAAGCTTGTAAAAGTTACACCGAATATTTAAGTAAAATTGATAATGGAGACGTGGAAAACGAAGCT GCACCACAAATAGCGATAGACTATTATCAATTACCAAATGACGCATTACTGCGTGATGTGATCTTAAAGATTCGTGATGA TGAAGCAAAACATCGAGATCGTAATCATTCGTTTGCTGACGCTTATGAAAACCACGATCTTCCTGCTCACCAACGTTAG
Upstream 100 bases:
>100_bases TTTTTATGGCTAAAATGTAAAAAATTAAATGTAGGAAAATAGTTGAGTAATTTTATTTAAAGTTGTATTTTAAATGCAAC TTTAAATAAAGGAGTGCTTA
Downstream 100 bases:
>100_bases GTATCATTTTTATGGGGCTAGAAATAGCCTCATTAACGTTGAATAAAAGTCATAAAATACTGCAATAATGGCGTTTGATA TTTTTCTTTATGAACCAATA
Product: hypothetical protein
Products: NA
Alternate protein names: AlteRNAtive Oxidase Superfamily; Oxidase
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MMSDFELKHKATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDEGWIRELL NEAENERMHLMIFLDIAKPRWIERTLVLLGQGVFMVVYSFIYLLSSKVAHRVVGYFEEEACKSYTEYLSKIDNGDVENEA APQIAIDYYQLPNDALLRDVILKIRDDEAKHRDRNHSFADAYENHDLPAHQR
Sequences:
>Translated_212_residues MMSDFELKHKATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDEGWIRELL NEAENERMHLMIFLDIAKPRWIERTLVLLGQGVFMVVYSFIYLLSSKVAHRVVGYFEEEACKSYTEYLSKIDNGDVENEA APQIAIDYYQLPNDALLRDVILKIRDDEAKHRDRNHSFADAYENHDLPAHQR >Mature_212_residues MMSDFELKHKATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMFNHLKALRRMKDDEGWIRELL NEAENERMHLMIFLDIAKPRWIERTLVLLGQGVFMVVYSFIYLLSSKVAHRVVGYFEEEACKSYTEYLSKIDNGDVENEA APQIAIDYYQLPNDALLRDVILKIRDDEAKHRDRNHSFADAYENHDLPAHQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24708; Mature: 24708
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSDFELKHKATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH NHLKALRRMKDDEGWIRELLNEAENERMHLMIFLDIAKPRWIERTLVLLGQGVFMVVYSF HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHH IYLLSSKVAHRVVGYFEEEACKSYTEYLSKIDNGDVENEAAPQIAIDYYQLPNDALLRDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCCHHHHHHH ILKIRDDEAKHRDRNHSFADAYENHDLPAHQR HHHHCCCHHHHHCCCCCHHHHHHCCCCCCCCC >Mature Secondary Structure MMSDFELKHKATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH NHLKALRRMKDDEGWIRELLNEAENERMHLMIFLDIAKPRWIERTLVLLGQGVFMVVYSF HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHH IYLLSSKVAHRVVGYFEEEACKSYTEYLSKIDNGDVENEAAPQIAIDYYQLPNDALLRDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCCHHHHHHH ILKIRDDEAKHRDRNHSFADAYENHDLPAHQR HHHHCCCHHHHHCCCCCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA