Click here to switch to the map view.

The map label for this gene is dapD

Identifier: 209694264

GI number: 209694264

Start: 752758

End: 753810

Strand: Reverse

Name: dapD

Synonym: VSAL_I0675

Alternate gene names: NA

Gene position: 753810-752758 (Counterclockwise)

Preceding gene: 209694265

Following gene: 209694263

Centisome position: 22.67

GC content: 42.07

Gene sequence:

>1053_bases
ATGAAAATGGAGAATCATTACATGGCTCATTTTGCACTTGCCTTTGGTACAGCGACAAAAAACCGCGACAATAAAATTAT
TGAAGCTTTTTTCCCACACCCAGTATTAAACCCATCTGAATCATTAGTTAACGCTATTGCTAAAGCAAGTGGTTATACGG
AGGGCAATCAAGCGATTGAAATTACATCTGAAGTTTGCACTGAACTTGCTAACGCTTTTGCAGCAAACGGGGATGTTCCA
AACGCGGCATTCGCAGAAAAGGCAGTTCAATCAAAGCAGCCTCTTGTTCTTGTTGTTTTAGCAACTGATGAACAATCTCA
ATCTGTTGCTGAAGGCTTTTTGAAACTTCAATTGATCTCTAATCGTTTAGTTAAGCCACATGGCACTGTACTGGATGGTA
TTTTTGGTTTATTACACAATATAGCGTGGACGAACCAAGGCCCTATCGATCTTCCTGAATTAGCCGATCGCCAAATAGAA
GCTCGCCTAGCTGGTGACACCCTGACTGTCGATTGTGTTGATAAATTTCCTAAAATGGTGGATTACGTTGTACCTACAGG
TATTCGTATTGCCGATACTTCTCGTGTTCGTTTAGGCGCACATGTAGGTAAAGGTACAACAGTAATGCATGAAGGCTTCA
TCAACTTTAACGCAGGTACTACTGGTGTGAGTATGGTTGAAGGTCGTATTTCTGCCGGTGTTGTTGTGGGTAATGGATCT
GATATCGGCGGTGGTGCTTCTATCATGGGTACACTTTCTGGTGGCGGTAAAATGGTTATCTCTATCGGTGAGAACTGCCT
ACTTGGCGCAAATGCAGGCCTTGGTTTCCCAATGGGTGATCGTTGTACGATTGAATCTGGCCTATATGTTACTGCAGGCA
CAAAAGTAAGCATGTTAGATAACCAAGGTAAAGAAGTTGAAGTCGCGAAAGCTCGTGATCTTGCAGGCAAAACAGATCTT
CTGTTCCGTCGTAACTCTATCACTGGTCAAATAGAATGTTTAACTAATAAATCTGCAATTGAACTGAACAGCGAATTACA
CAGCAACAACTAA

Upstream 100 bases:

>100_bases
CGCAATCTTGTAATAAAACAGCTAACGTAGCGATGATTTGATTGAACCAATGTGAATGAACGGATAATGATTTAAATAGG
TATAAATTACTATTATTGAT

Downstream 100 bases:

>100_bases
TATTCACTTAATAATATGAGTATGCATTCATACTCTATTCATTGATGAAACGGTATTCTTGTGGCCAGTAACTTTATTGT
TACTGGCCATTTTTATTGAA

Product: tetrahydrodipicolinate succinylase

Products: CoA; (R)-2-(succinylamino)-6-oxoheptanedioate

Alternate protein names: Transferase; Tetrahydrodipicolinate Succinylase; Tetrahydropicolinate Succinylase; Tetrahydrodipicolinate N- Succinyltransferase; Transferase Hexapeptide Repeat Containing Protein; Succinyltransferase; Succinyl-Transferase; Tranferase; Tetrahydrodipicolinate N-Succinyltransferase-Like Protein; Lysine Biosynthesis-Like Protein; Transferase Tetrahydrodipicolinate N-Succinyltransferase

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKMENHYMAHFALAFGTATKNRDNKIIEAFFPHPVLNPSESLVNAIAKASGYTEGNQAIEITSEVCTELANAFAANGDVP
NAAFAEKAVQSKQPLVLVVLATDEQSQSVAEGFLKLQLISNRLVKPHGTVLDGIFGLLHNIAWTNQGPIDLPELADRQIE
ARLAGDTLTVDCVDKFPKMVDYVVPTGIRIADTSRVRLGAHVGKGTTVMHEGFINFNAGTTGVSMVEGRISAGVVVGNGS
DIGGGASIMGTLSGGGKMVISIGENCLLGANAGLGFPMGDRCTIESGLYVTAGTKVSMLDNQGKEVEVAKARDLAGKTDL
LFRRNSITGQIECLTNKSAIELNSELHSNN

Sequences:

>Translated_350_residues
MKMENHYMAHFALAFGTATKNRDNKIIEAFFPHPVLNPSESLVNAIAKASGYTEGNQAIEITSEVCTELANAFAANGDVP
NAAFAEKAVQSKQPLVLVVLATDEQSQSVAEGFLKLQLISNRLVKPHGTVLDGIFGLLHNIAWTNQGPIDLPELADRQIE
ARLAGDTLTVDCVDKFPKMVDYVVPTGIRIADTSRVRLGAHVGKGTTVMHEGFINFNAGTTGVSMVEGRISAGVVVGNGS
DIGGGASIMGTLSGGGKMVISIGENCLLGANAGLGFPMGDRCTIESGLYVTAGTKVSMLDNQGKEVEVAKARDLAGKTDL
LFRRNSITGQIECLTNKSAIELNSELHSNN
>Mature_350_residues
MKMENHYMAHFALAFGTATKNRDNKIIEAFFPHPVLNPSESLVNAIAKASGYTEGNQAIEITSEVCTELANAFAANGDVP
NAAFAEKAVQSKQPLVLVVLATDEQSQSVAEGFLKLQLISNRLVKPHGTVLDGIFGLLHNIAWTNQGPIDLPELADRQIE
ARLAGDTLTVDCVDKFPKMVDYVVPTGIRIADTSRVRLGAHVGKGTTVMHEGFINFNAGTTGVSMVEGRISAGVVVGNGS
DIGGGASIMGTLSGGGKMVISIGENCLLGANAGLGFPMGDRCTIESGLYVTAGTKVSMLDNQGKEVEVAKARDLAGKTDL
LFRRNSITGQIECLTNKSAIELNSELHSNN

Specific function: Unknown

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.3.1.117

Molecular weight: Translated: 36958; Mature: 36958

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMENHYMAHFALAFGTATKNRDNKIIEAFFPHPVLNPSESLVNAIAKASGYTEGNQAIE
CCCCCHHHEEEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
ITSEVCTELANAFAANGDVPNAAFAEKAVQSKQPLVLVVLATDEQSQSVAEGFLKLQLIS
EHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHEEHH
NRLVKPHGTVLDGIFGLLHNIAWTNQGPIDLPELADRQIEARLAGDTLTVDCVDKFPKMV
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHEEEEECCCEEEEHHHHHHHHHH
DYVVPTGIRIADTSRVRLGAHVGKGTTVMHEGFINFNAGTTGVSMVEGRISAGVVVGNGS
HHHCCCCEEEECCCCEEEEEECCCCCEEEEECEEEECCCCCCHHEEECCEEEEEEEECCC
DIGGGASIMGTLSGGGKMVISIGENCLLGANAGLGFPMGDRCTIESGLYVTAGTKVSMLD
CCCCCEEEEEEECCCCEEEEEECCCEEEECCCCCCCCCCCCEEECCCEEEEECCEEEEEC
NQGKEVEVAKARDLAGKTDLLFRRNSITGQIECLTNKSAIELNSELHSNN
CCCCEEEEEHHHCCCCCCCEEEEECCCCEEEEEEECCCEEEECCHHCCCC
>Mature Secondary Structure
MKMENHYMAHFALAFGTATKNRDNKIIEAFFPHPVLNPSESLVNAIAKASGYTEGNQAIE
CCCCCHHHEEEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
ITSEVCTELANAFAANGDVPNAAFAEKAVQSKQPLVLVVLATDEQSQSVAEGFLKLQLIS
EHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHEEHH
NRLVKPHGTVLDGIFGLLHNIAWTNQGPIDLPELADRQIEARLAGDTLTVDCVDKFPKMV
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHEEEEECCCEEEEHHHHHHHHHH
DYVVPTGIRIADTSRVRLGAHVGKGTTVMHEGFINFNAGTTGVSMVEGRISAGVVVGNGS
HHHCCCCEEEECCCCEEEEEECCCCCEEEEECEEEECCCCCCHHEEECCEEEEEEEECCC
DIGGGASIMGTLSGGGKMVISIGENCLLGANAGLGFPMGDRCTIESGLYVTAGTKVSMLD
CCCCCEEEEEEECCCCEEEEEECCCEEEECCCCCCCCCCCCEEECCCEEEEECCEEEEEC
NQGKEVEVAKARDLAGKTDLLFRRNSITGQIECLTNKSAIELNSELHSNN
CCCCEEEEEHHHCCCCCCCEEEEECCCCEEEEEEECCCEEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinyl-CoA; (R)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate; H2O

Specific reaction: succinyl-CoA + (R)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + H2O = CoA + (R)-2-(succinylamino)-6-oxoheptanedioate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA