Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
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Accession | NC_011312 |
Length | 3,325,165 |
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The map label for this gene is 209694262
Identifier: 209694262
GI number: 209694262
Start: 750194
End: 751345
Strand: Reverse
Name: 209694262
Synonym: VSAL_I0672
Alternate gene names: NA
Gene position: 751345-750194 (Counterclockwise)
Preceding gene: 209694263
Following gene: 209694260
Centisome position: 22.6
GC content: 39.24
Gene sequence:
>1152_bases ATGTTTGAAATATTTAACCGATTTTTTTTATTAGGCTGGGTTAGCTTTGGTGGACCTGCCGCTCATATCGGTTACTTCCG CAATGAATTTGTACAAAAGCGAGGTTGGATAAGTGAAGAGGAATACGCACAACTGATCGCCTTGAGCCAGTTCTTACCTG GCCCAGGTTCAAGCCAAGTAGGCTTTGCTTTGGGTTATCACAGAAAAGGACTCTTTGGCGCTCTACTCGCTTCAATTGGT TTCACATTACCTTCCATTCTTATCATGGTGTTATTAGCAAATATAAGCCATTCATTCTTTGGTAATGACATCTTTGAAGG CATCATTCATGGATTGAAATTATTAGCCGTTGTTGTTGTTGCTGATGCCATCATGGGAATGTATAAGAGTTTTTGTAAGG ACAAAATCACGATACTTTTATGTATTATGACCGCAACCTTATTATTAATACTCCCTTCAATAAGCACACAATTAATTGCA CTGTTAATTGCCGCGATTATAGGTCGAATTTATCTAAAATCAGATAAGGTGACTGAGATTAAAAAAGAATCTAAAGGCAT TAATTGGTTACCCTTAATTATCTTTGCACTTTGTTTCTTTGCTTTACCTGCTATCGTTAATCATTCGCCATTACTCCTTC TTTTTTCTGATTTCTTCCAAGCAGGTAGTTTAGTCTTTGGTGGCGGTCATGTAGTCTTACCATTACTACAAAATATCGTT GGCGACCAAATTAGTACGGATAGCTTTTTAACGGGTTATGCTGCAGCTCAGGCTGTTCCCGGTCCAATGTTTACCTTTGC AACGTTCTTAGGATATGAATTGTGGAGTGAACAGCCAATTCTTGGTGCTTTAGTTGCAACCATTGCTATTTTCTTACCGG GATTTTCATTAGTACTTGGAGTATTTAGTCATTGGCAGGTTCTAGCTCAAAAACCAGCATTAGCAGGAGCAATTACGGGA ATTAATGCTTCTGTTGTCGGGTTACTAATCGCAGCGCTGTATGACCCTGTATTTACAAGCGCAGTAGGCTCAGGGGTAGA TATGGCATTAGTTATTATTGGCTTTGCATTACTTAAAGTACTTAAACTTCCCATTGTAGGTTTGGTTGGCTTCTTTATTG CCGCTGGTGGTATGTTGCCTTTCGTTGGTTGA
Upstream 100 bases:
>100_bases TAATTTAATCGATTTGAATAATTGGATAGTAACTCGTAATCTTTATCCCATCAAAATGGAATGTCCGAATTTGGATGATA CGTCAAAAGTTGAGTAGATT
Downstream 100 bases:
>100_bases TAAACATTAAGGTGGGTATAAATTCCCACCTTTAGTTTACCAGCATTCCTTAGGCTCACTTTTATTAAATTGATTTAAAG TAATCGCAGTATAAGTTTTC
Product: chromate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MFEIFNRFFLLGWVSFGGPAAHIGYFRNEFVQKRGWISEEEYAQLIALSQFLPGPGSSQVGFALGYHRKGLFGALLASIG FTLPSILIMVLLANISHSFFGNDIFEGIIHGLKLLAVVVVADAIMGMYKSFCKDKITILLCIMTATLLLILPSISTQLIA LLIAAIIGRIYLKSDKVTEIKKESKGINWLPLIIFALCFFALPAIVNHSPLLLLFSDFFQAGSLVFGGGHVVLPLLQNIV GDQISTDSFLTGYAAAQAVPGPMFTFATFLGYELWSEQPILGALVATIAIFLPGFSLVLGVFSHWQVLAQKPALAGAITG INASVVGLLIAALYDPVFTSAVGSGVDMALVIIGFALLKVLKLPIVGLVGFFIAAGGMLPFVG
Sequences:
>Translated_383_residues MFEIFNRFFLLGWVSFGGPAAHIGYFRNEFVQKRGWISEEEYAQLIALSQFLPGPGSSQVGFALGYHRKGLFGALLASIG FTLPSILIMVLLANISHSFFGNDIFEGIIHGLKLLAVVVVADAIMGMYKSFCKDKITILLCIMTATLLLILPSISTQLIA LLIAAIIGRIYLKSDKVTEIKKESKGINWLPLIIFALCFFALPAIVNHSPLLLLFSDFFQAGSLVFGGGHVVLPLLQNIV GDQISTDSFLTGYAAAQAVPGPMFTFATFLGYELWSEQPILGALVATIAIFLPGFSLVLGVFSHWQVLAQKPALAGAITG INASVVGLLIAALYDPVFTSAVGSGVDMALVIIGFALLKVLKLPIVGLVGFFIAAGGMLPFVG >Mature_383_residues MFEIFNRFFLLGWVSFGGPAAHIGYFRNEFVQKRGWISEEEYAQLIALSQFLPGPGSSQVGFALGYHRKGLFGALLASIG FTLPSILIMVLLANISHSFFGNDIFEGIIHGLKLLAVVVVADAIMGMYKSFCKDKITILLCIMTATLLLILPSISTQLIA LLIAAIIGRIYLKSDKVTEIKKESKGINWLPLIIFALCFFALPAIVNHSPLLLLFSDFFQAGSLVFGGGHVVLPLLQNIV GDQISTDSFLTGYAAAQAVPGPMFTFATFLGYELWSEQPILGALVATIAIFLPGFSLVLGVFSHWQVLAQKPALAGAITG INASVVGLLIAALYDPVFTSAVGSGVDMALVIIGFALLKVLKLPIVGLVGFFIAAGGMLPFVG
Specific function: Unknown
COG id: COG2059
COG function: function code P; Chromate transport protein ChrA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003370 - InterPro: IPR014047 [H]
Pfam domain/function: PF02417 Chromate_transp [H]
EC number: NA
Molecular weight: Translated: 40978; Mature: 40978
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFEIFNRFFLLGWVSFGGPAAHIGYFRNEFVQKRGWISEEEYAQLIALSQFLPGPGSSQV CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC GFALGYHRKGLFGALLASIGFTLPSILIMVLLANISHSFFGNDIFEGIIHGLKLLAVVVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADAIMGMYKSFCKDKITILLCIMTATLLLILPSISTQLIALLIAAIIGRIYLKSDKVTEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH KKESKGINWLPLIIFALCFFALPAIVNHSPLLLLFSDFFQAGSLVFGGGHVVLPLLQNIV HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHH GDQISTDSFLTGYAAAQAVPGPMFTFATFLGYELWSEQPILGALVATIAIFLPGFSLVLG CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHH VFSHWQVLAQKPALAGAITGINASVVGLLIAALYDPVFTSAVGSGVDMALVIIGFALLKV HHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LKLPIVGLVGFFIAAGGMLPFVG HHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MFEIFNRFFLLGWVSFGGPAAHIGYFRNEFVQKRGWISEEEYAQLIALSQFLPGPGSSQV CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC GFALGYHRKGLFGALLASIGFTLPSILIMVLLANISHSFFGNDIFEGIIHGLKLLAVVVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADAIMGMYKSFCKDKITILLCIMTATLLLILPSISTQLIALLIAAIIGRIYLKSDKVTEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH KKESKGINWLPLIIFALCFFALPAIVNHSPLLLLFSDFFQAGSLVFGGGHVVLPLLQNIV HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHH GDQISTDSFLTGYAAAQAVPGPMFTFATFLGYELWSEQPILGALVATIAIFLPGFSLVLG CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHH VFSHWQVLAQKPALAGAITGINASVVGLLIAALYDPVFTSAVGSGVDMALVIIGFALLKV HHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LKLPIVGLVGFFIAAGGMLPFVG HHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]