| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yeiJ [C]
Identifier: 209694208
GI number: 209694208
Start: 677973
End: 679256
Strand: Direct
Name: yeiJ [C]
Synonym: VSAL_I0616
Alternate gene names: 209694208
Gene position: 677973-679256 (Clockwise)
Preceding gene: 209694207
Following gene: 209694209
Centisome position: 20.39
GC content: 43.61
Gene sequence:
>1284_bases ATGAGCCTGTTAATGAGCTTGGTTGGGATAGTAGCGCTGCTTGCATTTGCAGTACTAATATCTGATAACCGTAAAGCAAT CAATCTACGTACTGTCGGTGGCGCTTTTGCCATTCAATTTATTCTAGGTGCATTCATACTATACGTACCTGTGGGTCGTG ATGTACTGTTAGGTGCATCTGAAGCGGTTGCGAATGTAATCAACTACGGTAACACGGGTATCGAATTCTTATTCGGTGGC TTAGTATCGAATAAAATGTTTGAAGTATTTGGTGGTGGCGGTTTCGTATTCGCACTGCGTGTACTTCCTGTAATCGTGTT CTTTGCATCACTGACTGCGGTACTTTATTACCTTGGTATCATGCAAGTTGTGATTAACTTCTTAGGTGGTGCTCTTCAAA AAGCACTGGGTACTTCTCGTGCGGAATCTCTTTCTGCTACAGCGAATATTTTCGTTGGTCAAACAGAAGCACCTCTAGTT GTTCGTCCATTCATTCCAAAAATGACTCAATCAGAATTGTTTGCCGTAATGTGTGGTGGTCTAGCTTCTGTTGCTGGTGG TGTTCTTGCTGGTTATGCGTCTATGGGCGTGCCTCTAGAGTACCTAATCGCGGCGTCATTCATGGCAGCTCCTGGTGGTC TTCTATTTGCTAAAATTCTTAAACCAGAAACAGAAACACCGGTTGATCAATTTGATGCACTTGATAACAAAGGCGACGAC AAACCAGCTAACGTAATCGATGCAGCAGCAGCAGGCGCTGCAACAGGTATGCAACTTGCGTTAAACGTAGGTGCAATGCT TCTTGCATTCATCGGTCTAATCGCTCTAATCAACGGTATCCTAGGTGGTGTTGGTGGTTGGTTCGGTATGCCAGAAATTA CGCTAGAACTTATTCTTGGTTACGTATTCGCTCCAGTTGCTTTCCTAATCGGTGTGCCGTGGGAAGAAGCGACAGTTGCA GGTTCGTTCTTAGGTCAAAAATTGGTAGTTAACGAATTCGTTGCTTACTTAAACTTTGCACCTTACCTAAAAGACGTTGC TGATGGCGGCATGTTAGTTGCACAAACTGGCGTTGAAATGTCTGAGAAAACGAAAGCAATCATTTCATTCGCACTATGTG GTTTTGCTAACCTTTCTTCTGTAGCTATCCTACTTGGTGGTTTAGGTAGCCTTGCTCCTGAACGTCGTCATGACATCGCT AAAATGGGCATGAAAGCTGTTGCTGCTGGTACATTATCTAACTTAATGTCAGCAACAATCGCAGGTCTATTCTTATCTAT CTAA
Upstream 100 bases:
>100_bases ATATGTGACAGCGGCATTACTTTCTTGGTGGTTCAATGAGTATAATCGCCCCCGCTAATTTGAAACACGCCAACAATCAA TTTTAGGGAAACTTTTAACT
Downstream 100 bases:
>100_bases TATTATAGAGACAGAAACGACTGATAAAAACCCGCAACGTGTTGCTAATGCCGATCATTTAAGGTAAATATGATCGGTTG ACCGATCCTTTTTATATGTC
Product: sodium-dependent nucleoside transporter protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MSLLMSLVGIVALLAFAVLISDNRKAINLRTVGGAFAIQFILGAFILYVPVGRDVLLGASEAVANVINYGNTGIEFLFGG LVSNKMFEVFGGGGFVFALRVLPVIVFFASLTAVLYYLGIMQVVINFLGGALQKALGTSRAESLSATANIFVGQTEAPLV VRPFIPKMTQSELFAVMCGGLASVAGGVLAGYASMGVPLEYLIAASFMAAPGGLLFAKILKPETETPVDQFDALDNKGDD KPANVIDAAAAGAATGMQLALNVGAMLLAFIGLIALINGILGGVGGWFGMPEITLELILGYVFAPVAFLIGVPWEEATVA GSFLGQKLVVNEFVAYLNFAPYLKDVADGGMLVAQTGVEMSEKTKAIISFALCGFANLSSVAILLGGLGSLAPERRHDIA KMGMKAVAAGTLSNLMSATIAGLFLSI
Sequences:
>Translated_427_residues MSLLMSLVGIVALLAFAVLISDNRKAINLRTVGGAFAIQFILGAFILYVPVGRDVLLGASEAVANVINYGNTGIEFLFGG LVSNKMFEVFGGGGFVFALRVLPVIVFFASLTAVLYYLGIMQVVINFLGGALQKALGTSRAESLSATANIFVGQTEAPLV VRPFIPKMTQSELFAVMCGGLASVAGGVLAGYASMGVPLEYLIAASFMAAPGGLLFAKILKPETETPVDQFDALDNKGDD KPANVIDAAAAGAATGMQLALNVGAMLLAFIGLIALINGILGGVGGWFGMPEITLELILGYVFAPVAFLIGVPWEEATVA GSFLGQKLVVNEFVAYLNFAPYLKDVADGGMLVAQTGVEMSEKTKAIISFALCGFANLSSVAILLGGLGSLAPERRHDIA KMGMKAVAAGTLSNLMSATIAGLFLSI >Mature_426_residues SLLMSLVGIVALLAFAVLISDNRKAINLRTVGGAFAIQFILGAFILYVPVGRDVLLGASEAVANVINYGNTGIEFLFGGL VSNKMFEVFGGGGFVFALRVLPVIVFFASLTAVLYYLGIMQVVINFLGGALQKALGTSRAESLSATANIFVGQTEAPLVV RPFIPKMTQSELFAVMCGGLASVAGGVLAGYASMGVPLEYLIAASFMAAPGGLLFAKILKPETETPVDQFDALDNKGDDK PANVIDAAAAGAATGMQLALNVGAMLLAFIGLIALINGILGGVGGWFGMPEITLELILGYVFAPVAFLIGVPWEEATVAG SFLGQKLVVNEFVAYLNFAPYLKDVADGGMLVAQTGVEMSEKTKAIISFALCGFANLSSVAILLGGLGSLAPERRHDIAK MGMKAVAAGTLSNLMSATIAGLFLSI
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI11545853, Length=368, Percent_Identity=38.5869565217391, Blast_Score=274, Evalue=1e-73, Organism=Homo sapiens, GI42542381, Length=426, Percent_Identity=37.0892018779343, Blast_Score=272, Evalue=4e-73, Organism=Homo sapiens, GI227116277, Length=422, Percent_Identity=36.0189573459716, Blast_Score=261, Evalue=1e-69, Organism=Escherichia coli, GI1788485, Length=425, Percent_Identity=49.4117647058824, Blast_Score=390, Evalue=1e-110, Organism=Escherichia coli, GI1788488, Length=425, Percent_Identity=49.8823529411765, Blast_Score=378, Evalue=1e-106, Organism=Escherichia coli, GI1788737, Length=418, Percent_Identity=29.9043062200957, Blast_Score=176, Evalue=3e-45, Organism=Caenorhabditis elegans, GI71991794, Length=413, Percent_Identity=30.7506053268765, Blast_Score=197, Evalue=8e-51, Organism=Caenorhabditis elegans, GI17560276, Length=410, Percent_Identity=29.5121951219512, Blast_Score=191, Evalue=6e-49, Organism=Caenorhabditis elegans, GI25146537, Length=236, Percent_Identity=29.6610169491525, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI45552517, Length=424, Percent_Identity=36.3207547169811, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI19921868, Length=424, Percent_Identity=36.3207547169811, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI45552519, Length=424, Percent_Identity=36.3207547169811, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI281360430, Length=422, Percent_Identity=35.5450236966825, Blast_Score=246, Evalue=2e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 44185; Mature: 44054
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLMSLVGIVALLAFAVLISDNRKAINLRTVGGAFAIQFILGAFILYVPVGRDVLLGAS CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHCCH EAVANVINYGNTGIEFLFGGLVSNKMFEVFGGGGFVFALRVLPVIVFFASLTAVLYYLGI HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MQVVINFLGGALQKALGTSRAESLSATANIFVGQTEAPLVVRPFIPKMTQSELFAVMCGG HHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCCCCEEEECCCCCCHHHHHHHHHHHH LASVAGGVLAGYASMGVPLEYLIAASFMAAPGGLLFAKILKPETETPVDQFDALDNKGDD HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCC KPANVIDAAAAGAATGMQLALNVGAMLLAFIGLIALINGILGGVGGWFGMPEITLELILG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH YVFAPVAFLIGVPWEEATVAGSFLGQKLVVNEFVAYLNFAPYLKDVADGGMLVAQTGVEM HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH SEKTKAIISFALCGFANLSSVAILLGGLGSLAPERRHDIAKMGMKAVAAGTLSNLMSATI HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AGLFLSI HHHHHCC >Mature Secondary Structure SLLMSLVGIVALLAFAVLISDNRKAINLRTVGGAFAIQFILGAFILYVPVGRDVLLGAS HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHCCH EAVANVINYGNTGIEFLFGGLVSNKMFEVFGGGGFVFALRVLPVIVFFASLTAVLYYLGI HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MQVVINFLGGALQKALGTSRAESLSATANIFVGQTEAPLVVRPFIPKMTQSELFAVMCGG HHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCCCCEEEECCCCCCHHHHHHHHHHHH LASVAGGVLAGYASMGVPLEYLIAASFMAAPGGLLFAKILKPETETPVDQFDALDNKGDD HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCC KPANVIDAAAAGAATGMQLALNVGAMLLAFIGLIALINGILGGVGGWFGMPEITLELILG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH YVFAPVAFLIGVPWEEATVAGSFLGQKLVVNEFVAYLNFAPYLKDVADGGMLVAQTGVEM HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH SEKTKAIISFALCGFANLSSVAILLGGLGSLAPERRHDIAKMGMKAVAAGTLSNLMSATI HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AGLFLSI HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]