Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 209694139

GI number: 209694139

Start: 599983

End: 600408

Strand: Reverse

Name: yqgF [C]

Synonym: VSAL_I0546

Alternate gene names: 209694139

Gene position: 600408-599983 (Counterclockwise)

Preceding gene: 209694140

Following gene: 209694136

Centisome position: 18.06

GC content: 41.78

Gene sequence:

>426_bases
ATGAGTTCACGCACCATCATGGCATTTGATTTTGGCACAAAAAGCATTGGCTCAGCCATTGGGCAAGAAATCACAGGTAC
CGCAAGTCCATTAAAAGCGTTTAAAGCTCAAGATGGCACCCCTAATTGGGATGATATTGAAAAGCAAATTAAAGAGTGGC
AACCTGATTTGATCGTTGTTGGTCTACCAACCGATCTTCATGGTAAAGAGTTAGACGTTATCACACCAAAAGCAAAGAAA
TTTGCTAACCGTCTGCACGGTCGTTTTGGTAATCAAGTCGAACTGCACGATGAACGCTTATCAACCGTAGAAGCTCGCGC
TGATTTATTTGAATTCGGTGGCTATAAAGCATTATCAAAAGGCAATGTCGATTGCCAATCTGCCGTTGTTATTTTAGAAA
GTTGGTTTGAGAGTCAATGGGGCTAA

Upstream 100 bases:

>100_bases
CTTCTGTTATTTTTGATACTCCTATTCCTGATCGTTGGCGCAGAGCTATCGAAATACTAGGCATTAGTCCAGTAAATATA
TCCAGCGAGGTTGGACACGC

Downstream 100 bases:

>100_bases
GGTCCAAAGACATAAAAGCAGGGTTCAGAGGTACTCGTTGTGAGCGTAACACTCACCGCACACACCTCTGAATTCTAAAC
GCAAAGCGTCCTGAATCCTG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVVGLPTDLHGKELDVITPKAKK
FANRLHGRFGNQVELHDERLSTVEARADLFEFGGYKALSKGNVDCQSAVVILESWFESQWG

Sequences:

>Translated_141_residues
MSSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVVGLPTDLHGKELDVITPKAKK
FANRLHGRFGNQVELHDERLSTVEARADLFEFGGYKALSKGNVDCQSAVVILESWFESQWG
>Mature_140_residues
SSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVVGLPTDLHGKELDVITPKAKKF
ANRLHGRFGNQVELHDERLSTVEARADLFEFGGYKALSKGNVDCQSAVVILESWFESQWG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=138, Percent_Identity=66.6666666666667, Blast_Score=193, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_ALISL (B6EMV2)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262067.1
- GeneID:   6988986
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0546
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15612; Mature: 15481

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVV
CCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
GLPTDLHGKELDVITPKAKKFANRLHGRFGNQVELHDERLSTVEARADLFEFGGYKALSK
ECCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCEEECCC
GNVDCQSAVVILESWFESQWG
CCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWQPDLIVV
CCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
GLPTDLHGKELDVITPKAKKFANRLHGRFGNQVELHDERLSTVEARADLFEFGGYKALSK
ECCCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCEEECCC
GNVDCQSAVVILESWFESQWG
CCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA